Evidence map›Paper›PMID 31563876›Full record

ArticleGut2020

Exploiting differential Wnt target gene expression to generate a molecular biomarker for colorectal cancer stratification.

Sam O Kleeman, Viktor H Koelzer, Helen Js Jones, Ester Gil Vazquez, Hayley Davis, James E East, Roland Arnold, Martijn Aj Koppens, Andrew Blake, Enric Domingo and 13 more

Open access · hybridAbstract read
In one paragraph

Article in Gut, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 76 citations in OpenAlex.

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  16. Caffeine Limits Expansion of Apc-Deficient Clones in the Intestine by NOTUM Inhibition.Cellular and molecular gastroenterology and hepatology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 4 countries.

Sam O KleemanIntestinal Stem Cell Biology Lab, Wellcome Trust Centre Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0003-1720-8804
Viktor H KoelzerIntestinal Stem Cell Biology Lab, Wellcome Trust Centre Human Genetics, University of Oxford, Oxford, UK.
Helen Js JonesIntestinal Stem Cell Biology Lab, Wellcome Trust Centre Human Genetics, University of Oxford, Oxford, UK.
Ester Gil VazquezIntestinal Stem Cell Biology Lab, Wellcome Trust Centre Human Genetics, University of Oxford, Oxford, UK.
Hayley DavisIntestinal Stem Cell Biology Lab, Wellcome Trust Centre Human Genetics, University of Oxford, Oxford, UK.ORCID 0000-0003-2914-4932
James E EastTranslational Gastroenterology Unit, John Radcliffe Hospital, Oxford, UK.
Roland ArnoldCancer Genetics and Evolution Laboratory, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, West Midlands, UK.
Martijn Aj KoppensIntestinal Stem Cell Biology Lab, Wellcome Trust Centre Human Genetics, University of Oxford, Oxford, UK.
Andrew BlakeDepartment of Oncology, University of Oxford, Oxford, Oxfordshire, UK.
Enric DomingoDepartment of Oncology, University of Oxford, Oxford, Oxfordshire, UK.
Chris CunninghamOxford Colorectal Surgery Department, Nuffield Department of Surgery, Churchill Hospital, Oxford, Oxfordshire, UK.
Andrew D BeggsSurgical Research Laboratory, Institute of Cancer & Genomic Science, University of Birmingham, Birminghaam, United Kingdom.ORCID 0000-0003-0784-2967
Valerie PestingerCancer Genetics and Evolution Laboratory, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, West Midlands, UK.
Maurice B LoughreyCentre for Cancer Research and Cell Biology, Queen's University Belfast, Belfast, Northern Ireland, UK.
Lai-Mun WangChangi General Hospital, Singapore.
Tamsin Rm LannaganSouth Australian Health & Medical Research Institute & School of Medicine, The University of Adelaide, Adelaide, South Australia, Australia.
Susan L WoodsSouth Australian Health & Medical Research Institute & School of Medicine, The University of Adelaide, Adelaide, South Australia, Australia.ORCID 0000-0002-8955-2017
Daniel WorthleySouth Australian Health & Medical Research Institute & School of Medicine, The University of Adelaide, Adelaide, South Australia, Australia.
S Cort Consortium
Ian TomlinsonCancer Genetics and Evolution Laboratory, Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, West Midlands, UK.ORCID 0000-0003-3037-1470
Philip D DunneCentre for Cancer Research and Cell Biology, Queen's University Belfast, Belfast, Northern Ireland, UK.ORCID 0000-0001-9160-283X
Timothy MaughanDepartment of Oncology, University of Oxford, Oxford, Oxfordshire, UK.
Simon J LeedhamIntestinal Stem Cell Biology Lab, Wellcome Trust Centre Human Genetics, University of Oxford, Oxford, UK simonl@well.ox.ac.uk.
Centre for Human Genetics · GBUniversity of Birmingham · GBSouth Australian Health and Medical Research Institute · AUUniversity of Oxford · GBQueen's University Belfast · GBChangi General Hospital · SGChurchill Hospital · GBJohn Radcliffe Hospital · GB

Funding

Cancer Research UK 27327Cancer Research UK C31641/A23923Department of HealthMedical Research Council MR/M016587/1Swiss National Science Foundation 168322Wellcome Trust 090532Wellcome Trust 102732Wellcome Trust 206314Wellcome Trust 206314/Z/17/ZWorldwide Cancer Research 16-0042
6 · The paper itself

Abstract

objectivePathological Wnt pathway activation is a conserved hallmark of colorectal cancer. Wnt-activating mutations can be divided into: i) ligand-independent (LI) alterations in intracellular signal transduction proteins (

designWe undertook harmonised multi-omic analysis of discovery (n=684) and validation cohorts (n=578) of colorectal tumours collated from publicly available data and the Stratification in Colorectal Cancer Consortium. We used mutation data to establish molecular ground truth and subdivide lesions into LI/LD tumour subsets. We contrasted transcriptional, methylation, morphological and clinical characteristics between groups.

resultsWnt disrupting mutations were mutually exclusive. Desmoplastic stromal upregulation of

conclusionsEpigenetic suppression of appropriate Wnt negative feedback loops is selectively advantageous in LD tumours and differential

Indexed as

AgedColorectal NeoplasmsFemaleGene Expression Regulation, NeoplasticGenetic MarkersHumansMaleMiddle AgedSignal TransductionWnt1 ProteinGenetic MarkersWnt1 ProteinAXIN2colorectal cancermolecular biomarkerstratificationWnt signalling

Identifiers

PMID31563876
PMCPMC7212029
OpenAlexW2976026968

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.