Evidence map›Paper›PMID 31563474›Full record

ArticleCell systems2019

Kalman-like Self-Tuned Sensitivity in Biophysical Sensing.

Kabir Husain, Weerapat Pittayakanchit, Gopal Pattanayak, Michael J Rust, Arvind Murugan

Open access · bronzeAbstract read
In one paragraph

Article in Cell systems, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. ChemotaxingbioRxiv : the preprint server for biology · 2025
    Article
  2. ChemotaxingArXiv · 2025
    Article
  3. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kabir HusainDepartment of Physics and James Franck Institute, University of Chicago, Chicago, IL, USA.
Weerapat PittayakanchitDepartment of Physics and James Franck Institute, University of Chicago, Chicago, IL, USA.
Gopal PattanayakDepartment of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL, USA.
Michael J RustDepartment of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL, USA.
Arvind MuruganDepartment of Physics and James Franck Institute, University of Chicago, Chicago, IL, USA. Electronic address: amurugan@uchicago.edu.
University of Chicago · USUniversity of Illinois Chicago · US

Funding

The Biochemistry of Clock Function in Fluctuating EnvironmentsR01GM135382 · NIGMS · UNIVERSITY OF CHICAGO · PI RUST, MICHAEL · 2020 to 2023
$1.3M
NIGMS NIH HHS R01 GM135382
6 · The paper itself

Abstract

Living organisms need to be sensitive to a changing environment while also ignoring uninformative environmental fluctuations. Here, we argue that living cells can navigate these conflicting demands by dynamically tuning their environmental sensitivity. We analyze the circadian clock in Synechococcus elongatus, showing that clock-metabolism coupling can detect mismatch between clock predictions and the day-night light cycle, temporarily raise the clock's sensitivity to light changes, and thus re-entraining faster. We find analogous behavior in recent experiments on switching between slow and fast osmotic-stress-response pathways in yeast. In both cases, cells can raise their sensitivity to new external information in epochs of frequent challenging stress, much like a Kalman filter with adaptive gain in signal processing. Our work suggests a new class of experiments that probe the history dependence of environmental sensitivity in biophysical sensing mechanisms.

Indexed as

Bayes TheoremBiophysical PhenomenaCircadian ClocksCircadian RhythmLightModels, BiologicalSynechococcuscircadian clockcyanobacteriaentrainmentgain adaptationgain-bandwidthosmotic shockrecursive bayesian estimationspeed-accuracyyeast

Identifiers

PMID31563474
PMCPMC10170658
OpenAlexW2976455457

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.