ArticleScientific data2019
De novo transcriptome assembly and analysis of the freshwater araphid diatom Fragilaria radians, Lake Baikal.
Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Article
- Differential Expression of Stress Adaptation Genes in a DiatomInternational journal of molecular sciences · 2024Article
- Brain transcriptome of gobies inhabiting natural COEvolutionary applications · 2023Article
- Review
- Improving the genome and proteome annotations of the marine model diatomMarine life science & technology · 2023Article
- Using genome-wide expression compendia to study microorganisms.Computational and structural biotechnology journal · 2022Review
- Insights intoBiology · 2021Article
- Full-Length Transcriptome ofMarine drugs · 2021Article
- De novo transcriptome analysis of Lantana camara L. revealed candidate genes involved in phenylpropanoid biosynthesis pathway.Scientific reports · 2020Article
- De novo transcriptome assembly and analysis of the freshwater araphid diatom Fragilaria radians, Lake Baikal.Scientific data · 2019Article
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Authors and funding
6 authors.
Funding
Abstract
Diatoms are a group of eukaryotic microalgae populating almost all aquatic and wet environments. Their abundance and species diversity make these organisms significant contributors to biogeochemical cycles and important components of aquatic ecosystems. Although significant progress has been made in studies of Diatoms (Bacillariophyta) over the last two decades, since the spread of "omics" technologies, our current knowledge of the molecular processes and gene regulatory networks that facilitate environmental adaptation remain incomplete. Here, we present a transcriptome analysis of Fragilaria radians isolated from Lake Baikal. The resulting assembly contains 27,446 transcripts encoding 21,996 putative proteins. The transcriptome assembly and annotation were coupled with quantitative experiments to search for differentially expressed transcripts between (i) exponential growth phase and dark-acclimated cell cultures, and (ii) those changing expression level during the early response to light treatment in dark-acclimated cells. The availability of F. radians genome and transcriptome data provides the basis for future targeted studies of this species. Furthermore, our results extend taxonomic and environmental sampling of Bacillariophyta, opening new opportunities for comparative omics-driven surveys.
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