Evidence map›Paper›PMID 31562322›Full record

ArticleNature communications2019

12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.

Ryo Takata, Atsushi Takahashi, Masashi Fujita, Yukihide Momozawa, Edward J Saunders, Hiroki Yamada, Kazuhiro Maejima, Kaoru Nakano, Yuichiro Nishida, Asahi Hishida and 21 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it, 62 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 13 institutions in 3 countries.

Ryo TakataDepartment of Urology, Iwate Medical University, Morioka, 020-8505, Japan. rtakata@iwate-med.ac.jp.ORCID http://orcid.org/0000-0002-4860-8942
Atsushi TakahashiLaboratory for Statistical Analysis, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.ORCID http://orcid.org/0000-0001-7099-8767
Masashi FujitaLaboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.ORCID http://orcid.org/0000-0002-1457-6233
Yukihide MomozawaLaboratory for Genotyping Development, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Edward J SaundersThe Institute of Cancer Research, London, SW7 3RP, UK.
Hiroki YamadaDepartment of Urology, Jikei University School of Medicine, 105-8461, Tokyo, Japan.
Kazuhiro MaejimaLaboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Kaoru NakanoLaboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Yuichiro NishidaDepartment of Preventive Medicine, Faculty of Medicine, Saga University, 840-8502, Saga, Japan.ORCID http://orcid.org/0000-0003-2320-7234
Asahi HishidaDepartment of Preventive Medicine, Nagoya University Graduate School of Medicine, Nagoya, 466-8550, Japan.
Keitaro MatsuoDivision of Cancer Epidemiology and Prevention, Aichi Cancer Center Research Institute, 464-8681, Nagoya, Japan.ORCID http://orcid.org/0000-0003-1761-6314
Kenji WakaiDepartment of Preventive Medicine, Nagoya University Graduate School of Medicine, Nagoya, 466-8550, Japan.
Taiki YamajiDivision of Epidemiology, Center for Public Health Sciences, National Cancer Center, Tokyo, 104-0045, Japan.
Norie SawadaDivision of Epidemiology, Center for Public Health Sciences, National Cancer Center, Tokyo, 104-0045, Japan.ORCID http://orcid.org/0000-0002-9936-1476
Motoki IwasakiDivision of Epidemiology, Center for Public Health Sciences, National Cancer Center, Tokyo, 104-0045, Japan.
Shoichiro TsuganeCenter for Public Health Sciences, National Cancer Center, 104-0045, Tokyo, Japan.ORCID http://orcid.org/0000-0003-4105-2774
Makoto SasakiIwate Tohoku Medical Megabank Organization, Iwate Medical University, Yahaba, 028-3694, Japan.ORCID http://orcid.org/0000-0002-3108-4361
Atsushi ShimizuIwate Tohoku Medical Megabank Organization, Iwate Medical University, Yahaba, 028-3694, Japan.ORCID http://orcid.org/0000-0001-8307-2461
Kozo TannoIwate Tohoku Medical Megabank Organization, Iwate Medical University, Yahaba, 028-3694, Japan.
Naoko MinegishiTohoku Medical Megabank Organization, Tohoku University, Sendai, 980-8573, Japan.
Kichiya SuzukiTohoku Medical Megabank Organization, Tohoku University, Sendai, 980-8573, Japan.ORCID http://orcid.org/0000-0001-5997-6567
Koichi MatsudaLaboratory of Clinical Genome Sequencing, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 108-8639, Tokyo, Japan.ORCID http://orcid.org/0000-0001-7292-2686
Michiaki KuboRIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Johji InazawaDepartment of Molecular Cytogenetics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, 113-8510, Japan.
Shin EgawaDepartment of Urology, Jikei University School of Medicine, 105-8461, Tokyo, Japan.
Christopher A HaimanCenter for Genetic Epidemiology, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, 90033, USA.
Osamu OgawaDepartment of Urology, Kyoto University Graduate School of Medicine, Kyoto, 606-8501, Japan.
Wataru ObaraDepartment of Urology, Iwate Medical University, Morioka, 020-8505, Japan.
Yoichiro KamataniLaboratory for Statistical Analysis, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.ORCID http://orcid.org/0000-0001-8748-5597
Shusuke AkamatsuLaboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan. akamats@kuhp.kyoto-u.ac.jp.
Hidewaki NakagawaLaboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan. hidewaki@riken.jp.
RIKEN Center for Integrative Medical Sciences · JPIwate Medical University · JPJikei University School of Medicine · JPKyoto University · JPNagoya University · JPTohoku University · JPAichi Cancer Center · JPInstitute of Cancer Research · GBNational Cerebral and Cardiovascular Center · JPSaga University · JPThe University of Tokyo · JPTokyo Medical and Dental University · JPUniversity of Southern California · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome-wide association studies (GWAS) have identified ~170 genetic loci associated with prostate cancer (PCa) risk, but most of them were identified in European populations. We here performed a GWAS and replication study using a large Japanese cohort (9,906 cases and 83,943 male controls) to identify novel susceptibility loci associated with PCa risk. We found 12 novel loci for PCa including rs1125927 (TMEM17, P = 3.95 × 10

Indexed as

Genome-Wide Association StudyAgedAllelesGATA2 Transcription FactorGene FrequencyGenetic LociGenetic Predisposition to DiseaseGenotypeGenotyping TechniquesHumansIntracellular Signaling Peptides and ProteinsJapanMaleMembrane ProteinsMiddle AgedPolymorphism, Single NucleotideGATA2 protein, humanGATA2 Transcription FactorIntracellular Signaling Peptides and ProteinsMembrane ProteinsSUN2 protein, humanTMEM170A protein, humanTranscription FactorsZMIZ1 protein, human

Identifiers

PMID31562322
PMCPMC6764957
OpenAlexW2976261401

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.