Evidence map›Paper›PMID 31561539›Full record

ArticleAnimals : an open access journal from MDPI2019

Genome-Wide Analysis of Allele-Specific Expression Patterns in Seventeen Tissues of Korean Cattle (Hanwoo).

Kyu-Sang Lim, Sun-Sik Chang, Bong-Hwan Choi, Seung-Hwan Lee, Kyung-Tai Lee, Han-Ha Chai, Jong-Eun Park, Woncheoul Park, Dajeong Lim

Open access · goldAbstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Kyu-Sang LimDepartment of Animal Science, Iowa State University, Ames, IA 50011, USA. kyusang0912@gmail.com.ORCID 0000-0001-5406-266X
Sun-Sik ChangHanwoo Research Institute, National Institute of Animal Science, Rural Development Administration, Pyeongchang 25340, Korea. jangsc@korea.kr.
Bong-Hwan ChoiAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, Rural Development Administration, Wanju 55365, Korea. bhchoi@korea.kr.
Seung-Hwan LeeDivision of Animal and Dairy Science, Chungnam National University, Daejeon 34134, Korea. slee46@cnu.ac.kr.
Kyung-Tai LeeAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, Rural Development Administration, Wanju 55365, Korea. leekt@korea.kr.ORCID 0000-0003-0990-4818
Han-Ha ChaiAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, Rural Development Administration, Wanju 55365, Korea. hanha@korea.kr.
Jong-Eun ParkAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, Rural Development Administration, Wanju 55365, Korea. jepark0105@korea.kr.ORCID 0000-0003-0718-3463
Woncheoul ParkAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, Rural Development Administration, Wanju 55365, Korea. wcpark1982@korea.kr.
Dajeong LimAnimal Genomics and Bioinformatics Division, National Institute of Animal Science, Rural Development Administration, Wanju 55365, Korea. lim.dj@korea.kr.ORCID 0000-0003-3966-9150
Rural Development Administration · KRChungnam National University · KRIowa State University · US

Funding

Rural Development Administration PJ01098002
6 · The paper itself

Abstract

The functional hemizygosity could be caused by the MAE of a given gene and it can be one of the sources to affect the phenotypic variation in cattle. We aimed to identify MAE genes across the transcriptome in Korean cattle (Hanwoo). For three Hanwoo family trios, the transcriptome data of 17 tissues were generated in three offspring. Sixty-two MAE genes had a monoallelic expression in at least one tissue. Comparing genotypes among each family trio, the preferred alleles of 18 genes were identified (maternal expression, n = 9; paternal expression, n = 9). The MAE genes are involved in gene regulation, metabolic processes, and immune responses, and in particular, six genes encode transcription factors (

Indexed as

allele-specific expressionHanwooRNA-Seq

Identifiers

PMID31561539
PMCPMC6826869
OpenAlexW2976333600

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.