Evidence map›Paper›PMID 31560826›Full record

ArticleMolecular plant pathology2019

Comparative transcriptome profiling uncovers a Lilium regale NAC transcription factor, LrNAC35, contributing to defence response against cucumber mosaic virus and tobacco mosaic virus.

Daoyang Sun, Xinguo Zhang, Qingyu Zhang, Xiaotong Ji, Yong Jia, Hong Wang, Lixin Niu, Yanlong Zhang

Open access · goldAbstract readComparative Study
In one paragraph

Article in Molecular plant pathology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
7.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
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  6. The Role of Plant Transcription Factors in the Fight against Plant Viruses.International journal of molecular sciences · 2023
    Review
  7. A petunia transcription factor,Horticulture research · 2023
    Article
  8. Article
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  10. Article
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  15. TransgenePlants (Basel, Switzerland) · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. International journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Daoyang SunCollege of Landscape Architecture and Arts, Northwest A&F University, Yangling, 712100, China.
Xinguo ZhangCollege of Landscape Architecture and Arts, Northwest A&F University, Yangling, 712100, China.
Qingyu ZhangCollege of Landscape Architecture and Arts, Northwest A&F University, Yangling, 712100, China.
Xiaotong JiCollege of Landscape Architecture and Arts, Northwest A&F University, Yangling, 712100, China.
Yong JiaState Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Perth, 6150, Australia.
Hong WangInstitute of Pomology/Jiangsu Key Laboratory for Horticultural Crop Genetic Improvement, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.
Lixin NiuCollege of Landscape Architecture and Arts, Northwest A&F University, Yangling, 712100, China.
Yanlong ZhangCollege of Landscape Architecture and Arts, Northwest A&F University, Yangling, 712100, China.ORCID 0000-0001-8931-2171
Northwest A&F University · CNJiangsu Academy of Agricultural Sciences · CNMurdoch University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cucumber mosaic virus (CMV) is a highly prevalent viral pathogen causing substantial damage to the bulb and cut-flower production of Lilium spp. Here, we performed an Illumina RNA sequencing (RNA-Seq) study on the leaf tissues of a virus-resistant species Lilium regale inoculated with mock control and CMV. A total of 1346 differentially expressed genes (DEGs) were identified in the leaves of L. regale upon CMV inoculation, which contained 34 up-regulated and 40 down-regulated DEGs that encode putative transcription factors (TFs). One up-regulated TF, LrNAC35, belonging to the NAM/ATAF/CUC (NAC) superfamily, was selected for further functional characterization. Aside from CMV, lily mottle virus and lily symptomless virus infections provoked a striking increase in LrNAC35 transcripts in both resistant and susceptible Lilium species. The treatments with low temperature and several stress-related hormones activated LrNAC35 expression, contrary to its reduced expression under salt stress. Ectopic overexpression of LrNAC35 in petunia (Petunia hybrida) resulted in reduced susceptibility to CMV and Tobacco mosaic virus infections, and enhanced accumulation of lignin in the cell walls. Four lignin biosynthetic genes, including PhC4H, Ph4CL, PhHCT and PhCCR, were found to be up-regulated in CMV-infected petunia lines overexpressing LrNAC35. In vivo promoter-binding tests showed that LrNAC35 specifically regulated the expression of Ph4CL. Taken together, our results suggest a positive role of transcriptome-derived LrNAC35 in transcriptional modulation of host defence against viral attack.

Indexed as

CucumovirusDisease ResistanceGene Expression ProfilingLiliumPlant DiseasesPlant LeavesPlant ProteinsRNA-SeqTobacco Mosaic VirusTranscription FactorsPlant ProteinsTranscription FactorsCucumber mosaic virusligninLilium regaleNAC transcription factorpetuniaTobacco mosaic virustranscriptome

Identifiers

PMID31560826
PMCPMC6859495
OpenAlexW2976052135

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.