Evidence map›Paper›PMID 31560822›Full record

ArticleMolecular plant pathology2019

RNA-Seq of in planta-expressed Magnaporthe oryzae genes identifies MoSVP as a highly expressed gene required for pathogenicity at the initial stage of infection.

Motoki Shimizu, Yuki Nakano, Akiko Hirabuchi, Kae Yoshino, Michie Kobayashi, Kosuke Yamamoto, Ryohei Terauchi, Hiromasa Saitoh

Open access · goldAbstract read
In one paragraph

Article in Molecular plant pathology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

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  9. Characterization of a unique polysaccharide monooxygenase from the plant pathogenProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  12. Microorganisms · 2022
    Review
  13. A genetically linked pair of NLR immune receptors shows contrasting patterns of evolution.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Motoki ShimizuDivision of Genomics and Breeding, Iwate Biotechnology Research Center, Iwate, 024-0003, Japan.
Yuki NakanoDivision of Genomics and Breeding, Iwate Biotechnology Research Center, Iwate, 024-0003, Japan.
Akiko HirabuchiDivision of Genomics and Breeding, Iwate Biotechnology Research Center, Iwate, 024-0003, Japan.
Kae YoshinoDepartment of Molecular Microbiology, Faculty of Life Sciences, Tokyo University of Agriculture, Tokyo, 156-8502, Japan.
Michie KobayashiDivision of Genomics and Breeding, Iwate Biotechnology Research Center, Iwate, 024-0003, Japan.
Kosuke YamamotoDepartment of Molecular Microbiology, Faculty of Life Sciences, Tokyo University of Agriculture, Tokyo, 156-8502, Japan.
Ryohei TerauchiDivision of Genomics and Breeding, Iwate Biotechnology Research Center, Iwate, 024-0003, Japan.
Hiromasa SaitohDepartment of Molecular Microbiology, Faculty of Life Sciences, Tokyo University of Agriculture, Tokyo, 156-8502, Japan.ORCID 0000-0002-0124-9276
Iwate Biotechnology Research Center · JPTokyo University of Agriculture · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ascomycete fungus Magnaporthe oryzae is a hemibiotrophic pathogen that causes rice blast disease. Magnaporthe oryzae infects rice leaves, stems and panicles, and induces severe reductions in yield. Effector proteins secreted by M. oryzae in planta are thought to be involved its virulence activity. Here, using RNA-sequencing (RNA-Seq), we generated transcriptome data for M. oryzae isolate Ina168 during the initial stages of infection. We prepared samples from conidia (the inoculum) and from peeled epidermal cotyledon tissue of susceptible barley Hordeum vulgare 'Nigrate' at 12, 24, 36 and 48 hours post-inoculation (hpi). We also generated a draft genome sequence of M. oryzae isolate Ina168 and used it as a reference for mapping the RNA-Seq reads. Gene expression profiling across all stages of M. oryzae infection revealed 1728 putative secreted effector protein genes. We selected seven such genes that were strongly up-regulated at 12 hpi and down-regulated at 24 or 36 hpi and performed gene knockout analysis to determine their roles in pathogenicity. Knockout of MoSVP, encoding a small putative secreted protein with a hydrophobic surface binding protein A domain, resulted in a reduction in pathogenicity, suggesting that MoSVP is a novel virulence effector of M. oryzae.

Indexed as

Genes, FungalFungal ProteinsGene Knockout TechniquesHordeumMagnaporthePlant DiseasesRNA-SeqVirulenceFungal Proteinsbarleyeffector genesexpression profilinggene knockoutHsbAMagnaporthe oryzaeRNA-Seq

Identifiers

PMID31560822
PMCPMC6859710
OpenAlexW2974962240

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.