Evidence map›Paper›PMID 31560690›Full record

ArticlePloS one2019

Spectral characteristics of urine specimens from healthy human volunteers analyzed using Raman chemometric urinalysis (Rametrix).

Ryan S Senger, Varun Kavuru, Meaghan Sullivan, Austin Gouldin, Stephanie Lundgren, Kristen Merrifield, Caitlin Steen, Emily Baker, Tommy Vu, Ben Agnor and 10 more

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  3. Review
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Ryan S SengerDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.ORCID 0000-0002-2450-6693
Varun KavuruVeteran Affairs Medical Center, Salem, Virginia, United States of America.
Meaghan SullivanDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Austin GouldinDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Stephanie LundgrenDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Kristen MerrifieldDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Caitlin SteenDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Emily BakerDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Tommy VuDepartment of Chemical Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Ben AgnorDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Gabrielle MartinezDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.ORCID 0000-0001-7538-318X
Hana CooganDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
William CarswellDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, Virginia, United States of America.
Lampros KarageorgeVeteran Affairs Medical Center, Salem, Virginia, United States of America.
Devasmita DevVeteran Affairs Medical Center, Salem, Virginia, United States of America.
Pang DuDepartment of Statistics, Virginia Tech, Blacksburg, Virginia, United States of America.ORCID 0000-0003-1365-4831
Allan SklarLewis-Gale Medical Center, Salem, Virginia, United States of America.
Giuseppe OrlandoDepartment of Surgical Sciences - Transplant, Wake Forest University Baptist Medical Center, Winston-Salem, North Carolina, United States of America.
James PirkleDepartment of Internal Medicine - Nephrology, Wake Forest University Baptist Medical Center, Winston-Salem, North Carolina, United States of America.
John L RobertsonDialySenors, Inc., Blacksburg, Virginia, United States of America.

Funding

EPA EP-D-15-015
6 · The paper itself

Abstract

Raman chemometric urinalysis (Rametrix™) was used to analyze 235 urine specimens from healthy individuals. The purpose of this study was to establish the "range of normal" for Raman spectra of urine specimens from healthy individuals. Ultimately, spectra falling outside of this range will be correlated with kidney and urinary tract disease. Rametrix™ analysis includes direct comparisons of Raman spectra but also principal component analysis (PCA), discriminant analysis of principal components (DAPC) models, multivariate statistics, and it is available through GitHub as the Rametrix™ LITE Toolbox for MATLAB®. Results showed consistently overlapping Raman spectra of urine specimens with significantly larger variances in Raman shifts, found by PCA, corresponding to urea, creatinine, and glucose concentrations. A 2-way ANOVA test found that age of the urine specimen donor was statistically significant (p < 0.001) and donor sex (female or male identification) was less so (p = 0.0526). With DAPC models and blind leave-one-out build/test routines using the Rametrix™ PRO Toolbox (also available through GitHub), an accuracy of 71% (sensitivity = 72%; specificity = 70%) was obtained when predicting whether a urine specimen from a healthy unknown individual was from a female or male donor. Finally, from female and male donors (n = 4) who contributed first morning void urine specimens each day for 30 days, the co-occurrence of menstruation was found statistically insignificant to Rametrix™ results (p = 0.695). In addition, Rametrix™ PRO was able to link urine specimens with the individual donor with an average of 78% accuracy. Taken together, this study established the range of Raman spectra that could be expected when obtaining urine specimens from healthy individuals and analyzed by Rametrix™ and provides the methodology for linking results with donor characteristics.

Indexed as

AdolescentAdultAgedCreatinineDiscriminant AnalysisFemaleGlycosuriaHealthy VolunteersHumansMaleMiddle AgedMultivariate AnalysisPrincipal Component AnalysisReference ValuesSpectrum Analysis, RamanUreaCreatinineUrea

Identifiers

PMID31560690
PMCPMC6764656

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.