Evidence map›Paper›PMID 31558800›Full record

ArticleOncogene2020

Identification and characterization of a BRAF fusion oncoprotein with retained autoinhibitory domains.

Florian Weinberg, Ricarda Griffin, Martina Fröhlich, Christoph Heining, Sandra Braun, Corinna Spohr, Mary Iconomou, Viola Hollek, Michael Röring, Peter Horak and 14 more

Abstract read
PubMed Publisher
In one paragraph

Article in Oncogene, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. MOST wanted: navigating the MAPK-OIS-SASP-tumor microenvironment axis in primary pediatric low-grade glioma and preclinical models.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2024
    Review
  9. Tumor-Agnostic Genomic and Clinical Analysis of BRAF Fusions Identifies Actionable Targets.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  10. Article
  11. BRAFScience advances · 2023
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Inhibition of RAF dimers: it takes two to tango.Biochemical Society transactions · 2021
    Review
  19. TheFrontiers in molecular neuroscience · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 4 institutions in 1 country.

Florian WeinbergInstitute of Molecular Medicine and Cell Research, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Ricarda GriffinInstitute of Molecular Medicine and Cell Research, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID http://orcid.org/0000-0003-1368-2832
Martina FröhlichDivision of Applied Bioinformatics, German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT) Heidelberg, Heidelberg, Germany.
Christoph HeiningDepartment of Translational Medical Oncology, NCT Dresden, Dresden, and DKFZ, Heidelberg, Germany.
Sandra BraunInstitute of Molecular Medicine and Cell Research, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Corinna SpohrInstitute of Molecular Medicine and Cell Research, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Mary IconomouInstitute of Molecular Medicine and Cell Research, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Viola HollekInstitute of Molecular Medicine and Cell Research, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Michael RöringInstitute of Molecular Medicine and Cell Research, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Peter HorakDepartment of Translational Medical Oncology, NCT Heidelberg and DKFZ, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-4536-9306
Simon KreutzfeldtDepartment of Translational Medical Oncology, NCT Heidelberg and DKFZ, Heidelberg, Germany.
Gregor WarsowOmics IT and Data Management Core Facility, DKFZ, Heidelberg, Germany.
Barbara HutterDivision of Applied Bioinformatics, German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT) Heidelberg, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-9034-0329
Sebastian UhrigDivision of Applied Bioinformatics, German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT) Heidelberg, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-0068-5957
Olaf NeumannDKTK, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-2684-9187
David ReussDKTK, Heidelberg, Germany.
Dieter Henrik HeilandDepartment of Neurosurgery, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID http://orcid.org/0000-0002-9258-3033
Christof von KalleDepartment of Translational Oncology, NCT Heidelberg and DKFZ, Heidelberg, Germany.
Wilko WeichertInstitute of Pathology, Technical University Munich, Munich, Germany.
Albrecht StenzingerDKTK, Heidelberg, Germany.
Benedikt BrorsDivision of Applied Bioinformatics, German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT) Heidelberg, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-5940-3101
Hanno Glimm *Department of Translational Medical Oncology, NCT Dresden, Dresden, and DKFZ, Heidelberg, Germany.
Stefan Fröhling *Department of Translational Medical Oncology, NCT Heidelberg and DKFZ, Heidelberg, Germany. stefan.froehling@nct-heidelberg.de.ORCID http://orcid.org/0000-0001-7907-4595
Tilman Brummer *Institute of Molecular Medicine and Cell Research, Faculty of Medicine, University of Freiburg, Freiburg, Germany. tilman.brummer@mol-med.uni-freiburg.de.ORCID http://orcid.org/0000-0003-4387-7905
Heidelberg University · DEUniversity of Freiburg · DEGerman Cancer Research Center · DEGerman Knee Society · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fusion proteins involving the BRAF serine/threonine kinase occur in many cancers. The oncogenic potential of BRAF fusions has been attributed to the loss of critical N-terminal domains that mediate BRAF autoinhibition. We used whole-exome and RNA sequencing in a patient with glioblastoma multiforme to identify a rearrangement between TTYH3, encoding a membrane-resident, calcium-activated chloride channel, and BRAF intron 1, resulting in a TTYH3-BRAF fusion protein that retained all features essential for BRAF autoinhibition. Accordingly, the BRAF moiety of the fusion protein alone, which represents full-length BRAF without the amino acids encoded by exon 1 (BRAF

Indexed as

Oncogene Proteins, FusionAgedAntineoplastic AgentsCell Line, TumorChloride ChannelsFemaleGlioblastomaHeterocyclic Compounds, 2-RingHumansMAP Kinase Signaling SystemPhosphorylationProtein DomainsProto-Oncogene Proteins B-rafPyridonesPyrimidinonesSignal TransductionAntineoplastic AgentsBRAF protein, humanChloride ChannelsHeterocyclic Compounds, 2-RingOncogene Proteins, FusionPLX8394Proto-Oncogene Proteins B-rafPyridonesPyrimidinonesSulfonamidestrametinibTTYH3 protein, human

Identifiers

PMID31558800
OpenAlexW2976477572

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.