ArticleScientific reports2019
Genome-wide association study overcomes the genome complexity in autohexaploid chrysanthemum and tags SNP markers onto the flower color genes.
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed, 32 citations in OpenAlex.
- Genome-wide association study bridging genomics-phenomics gap in natural plant populations.Journal of applied genetics · 2026Review
- Augmenting plant-pollinator interactions to promote biodiversity and global food security.Frontiers in plant science · 2026Review
- Phenotypic Characterization and Marker-Trait Association Analysis Using SCoT Markers in Chrysanthemum (Genes · 2025Article
- Beyond bloom: validated marker-trait discovery for polyploid roses via GWAS.Frontiers in plant science · 2025Article
- Multi-locus genome-wide association studies reveal the dynamic genetic architecture of flowering time in chrysanthemum.Plant cell reports · 2024Article
- A self-compatible pear mutant derived from γ-irradiated pollen carries an 11-Mb duplication in chromosome 17.Frontiers in plant science · 2024Article
- Overcoming Difficulties in Molecular Biological Analysis through a Combination of Genetic Engineering, Genome Editing, and Genome Analysis in HexaploidPlants (Basel, Switzerland) · 2023Review
- Genotyping by Sequencing for SNP-Based Linkage Analysis and the Development of KASPar Markers for Male Sterility and Polyembryony in Citrus.Plants (Basel, Switzerland) · 2023Article
- GWAS of adventitious root formation in roses identifies a putative phosphoinositide phosphatase (SAC9) for marker-assisted selection.PloS one · 2023Article
- Towards the Improvement of Ornamental Attributes in Chrysanthemum: Recent Progress in Biotechnological Advances.International journal of molecular sciences · 2022Review
- Resequencing and genome-wide association studies of autotetraploid potato.Molecular horticulture · 2022Article
- A genome-wide association and fine-mapping study of white rust resistance in hexaploid chrysanthemum cultivars with a wild diploid reference genome.Horticulture research · 2022Article
- Asymptotic tests for Hardy-Weinberg equilibrium in hexaploids.Horticulture research · 2022Article
- DNA marker for resistance toBreeding science · 2021Article
- Anthocyanins in Floral Colors: Biosynthesis and Regulation in Chrysanthemum Flowers.International journal of molecular sciences · 2020Review
- Genetic and Epigenetic Changes Are Rapid Responses of the Genome to the Newly Synthesized AutotetraploidFrontiers in genetics · 2020Article
Corrections and comments
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The use of DNA markers has revolutionized selection in crop breeding by linkage mapping and QTL analysis, but major problems still remain for polyploid species where marker-assisted selection lags behind the situation in diploids because of its high genome complexity. To overcome the complex genetic mode in the polyploids, we investigated the development of a strategy of genome-wide association study (GWAS) using single-dose SNPs, which simplify the segregation patterns associated polyploids, with respect to the development of DNA markers. In addition, we employed biparental populations for the GWAS, wherein the SNP allele frequency could be predicted. The research investigated whether the method could be used to effectively develop DNA markers for petal color in autohexaploid chrysanthemum (Chrysanthemum morifolium; 2n = 6x = 54). The causal gene for this trait is already-known CmCCD4a encoding a dioxygenase which cleaves carotenoids in petals. We selected 9,219 single-dose SNPs, out of total 52,489 SNPs identified by dd-RAD-Seq, showing simplex (1 × 0) and double-simplex (1 × 1) inheritance pattern according to alternative allele frequency with respect to the SNP loci in the F
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