Evidence map›Paper›PMID 31558711›Full record

ArticleNature communications2019

Catalytically inactive Dnmt3b rescues mouse embryonic development by accessory and repressive functions.

Pawel Nowialis, Katarina Lopusna, Jana Opavska, Staci L Haney, Ajay Abraham, Peike Sheng, Alberto Riva, Amarnath Natarajan, Olga Guryanova, Melanie Simpson and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 49 citations in OpenAlex.

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  17. miR-539-5p regulatesMolecular therapy. Nucleic acids · 2022
    Article
  18. DNMT3A Harboring Leukemia-Associated Mutations Directs Sensitivity to DNA Damage at Replication Forks.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Pawel NowialisDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, 2033 Mowry Rd, CGRC 258, Gainesville, FL, 32610, USA.
Katarina LopusnaDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, 2033 Mowry Rd, CGRC 258, Gainesville, FL, 32610, USA.
Jana OpavskaDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, 2033 Mowry Rd, CGRC 258, Gainesville, FL, 32610, USA.
Staci L HaneyDepartment of Internal Medicine, University of Nebraska Medical Center, 985950 Nebraska Medical Center, Omaha, NE, 68198, USA.
Ajay AbrahamDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, 2033 Mowry Rd, CGRC 258, Gainesville, FL, 32610, USA.ORCID http://orcid.org/0000-0003-4094-2476
Peike ShengDepartment of Biochemistry and Molecular Biology, University of Florida College of Medicine, 2033 Mowry Rd, CGRC 263, Gainesville, FL, 32610, USA.
Alberto RivaICBR Bioinformatics, Cancer and Genetics Research Complex, University of Florida, P.O. Box 103622, Gainesville, FL, 32610, USA.ORCID http://orcid.org/0000-0001-9150-8333
Amarnath NatarajanUniversity of Nebraska Medical Center, The Eppley Institute for Research in Cancer and Allied Diseases, Fred & Pamela Buffett Cancer Center, 986805 Nebraska Medical Center, Omaha, NE, 68198, USA.ORCID http://orcid.org/0000-0001-5067-0203
Olga GuryanovaDepartment of Pharmacology and Therapeutics, University of Florida College of Medicine, 2033 Mowry Rd, CGRC 260, Gainesville, FL, 32610, USA.
Melanie SimpsonMolecular and Structural Biochemistry, NC State University, Raleigh, NC, 27695, USA.
Ryan HladyDepartment of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, MN, 55901, USA.ORCID http://orcid.org/0000-0002-2829-4237
Mingyi XieUF Health Cancer Center, University of Florida, Gainesville, FL, 32610, USA.
Rene OpavskyDepartment of Anatomy and Cell Biology, University of Florida College of Medicine, 2033 Mowry Rd, CGRC 258, Gainesville, FL, 32610, USA. ropavsky@ufl.edu.
University of Florida Health · USUniversity of Florida · USUniversity of Nebraska Medical Center · USMayo Clinic · USNorth Carolina State University · US

Funding

CHEMICAL CARCINOGENESIS &CANCER BIOLOGYT32CA009476 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Jennifer D. Black · 1988 to 2026
$6.2M
RNA metabolism mediated by the Integrator complexR35GM128753 · NIGMS · UNIVERSITY OF FLORIDA · PI MINGYI XIE · 2018 to 2026
$4.0M
The Tumor Suppressor Function of Dnmt3a in Chronic Lymphocytic LeukemiaR01CA188561 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI OPAVSKY, RENE · 2015 to 2019
$1.7M
The role of DNMT3A mutations in clonal heterogeneity and evolution of hematopoiesisR01DK121831 · NIDDK · UNIVERSITY OF FLORIDA · PI GURYANOVA, OLGA A · 2019 to 2023
$1.7M
Biologic and therapeutic relevance of DNMT3A mutations in acute myeloid leukemiaR00CA178191 · NCI · UNIVERSITY OF FLORIDA · PI GURYANOVA, OLGA A · 2016 to 2018
$759k
Noncanonical microRNA biogenesis and function in a gamma herpesvirus and mammalsR00CA190886 · NCI · UNIVERSITY OF FLORIDA · PI XIE, MINGYI · 2016 to 2018
$739k
NCI NIH HHS R00 CA178191NCI NIH HHS R00 CA190886NCI NIH HHS R01 CA188561NCI NIH HHS T32 CA009476NIDDK NIH HHS R01 DK121831NIGMS NIH HHS R35 GM128753
6 · The paper itself

Abstract

DNA methylation regulates gene expression in a variety of processes, including mouse embryonic development. Four catalytically active enzymes function in mice as DNA methyltransferases (Dnmts) and as transcriptional regulators. Inactivation of Dnmt3b results in mouse embryonic lethality, but which activities are involved is unclear. Here we show that catalytically inactive Dnmt3b restores a majority of methylation and expression changes deregulated in the absence of Dnmt3b, and as a result, mice survive embryonic development. Thus, Dnmt3b functions as an accessory cofactor supporting catalytic activities performed by other Dnmts. We further demonstrate that Dnmt3b is linked to a control of major developmental pathways, including Wnt and hedgehog signaling. Dnmt3b directly represses Wnt9b whose aberrant up-regulation contributes to embryonic lethality of Dnmt3b knockout embryos. Our results highlight that Dnmt3b is a multifaceted protein that serves as an enzyme, an accessory factor for other methyltransferases, and as a transcriptional repressor in mouse embryogenesis.

Indexed as

DNA MethylationGene Expression Regulation, DevelopmentalAnimalsBiocatalysisDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BEmbryonic DevelopmentFemaleHedgehog ProteinsHEK293 CellsHumansMice, Inbred C57BLMice, KnockoutMice, TransgenicSignal TransductionWnt ProteinsDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BHedgehog ProteinsWnt9b protein, mouseWnt Proteins

Identifiers

PMID31558711
PMCPMC6763448
OpenAlexW2976747241

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.