Evidence map›Paper›PMID 31557664›Full record

ArticleJournal of clinical virology : the official publication of the Pan American Society for Clinical Virology2019

One-step pentaplex real-time polymerase chain reaction assay for detection of zika, dengue, chikungunya, West nile viruses and a human housekeeping gene.

Nischay Mishra, James Ng, Jennifer L Rakeman, Michael J Perry, Dominick A Centurioni, Amy B Dean, Adam Price, Riddhi Thakkar, Andreina Garcia Angus, Phillip Williamson and 7 more

Abstract read
In one paragraph

Article in Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Evaluation of the NovaplexInternational journal of molecular sciences · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Excellent capability for molecular detection ofJournal of clinical microbiology · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Human virus detection with graphene-based materials.Biosensors & bioelectronics · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Nischay MishraCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA. Electronic address: nm2641@cumc.columbia.edu.
James NgCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Jennifer L RakemanPublic Health Laboratory, New York City Department of Health and Mental Hygiene, New York, NY, USA.
Michael J PerryBiodefense Laboratory, Wadsworth Center, New York State Department of Health, Albany, NY, USA.
Dominick A CenturioniBiodefense Laboratory, Wadsworth Center, New York State Department of Health, Albany, NY, USA.
Amy B DeanVirology Laboratory, Wadsworth Center, New York State Department of Health, Albany, NY, USA.
Adam PriceCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Riddhi ThakkarCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Andreina Garcia AngusCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Phillip WilliamsonCreative Testing Solutions, Tempe, Arizona, USA.
Eric DelwartDepartment of Laboratory Medicine, University of California at San Francisco, San Francisco, CA, USA.
Christine CarringtonDepartment of Preclinical Sciences, Faculty of Medical Sciences, The University of the West Indies, St. Augustine, Trinidad and Tobago.
Nikita SahadeoDepartment of Preclinical Sciences, Faculty of Medical Sciences, The University of the West Indies, St. Augustine, Trinidad and Tobago.
Xiaoyu CheCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Thomas BrieseCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
Rafal TokarzCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.
W Ian LipkinCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY, USA.

Funding

Translational CoreU19AI109761 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BARIC, RALPH S · 2014 to 2018
$32.6M
NIAID NIH HHS U19 AI109761
6 · The paper itself

Abstract

backgroundRecent emergence of Zika virus (ZIKV), and the global spread of dengue (DENV), chikungunya (CHIKV) and West Nile viruses (WNV) raised urgent need of accurate and affordable molecular diagnosis of these clinically indistinguishable arboviral infections.

objectivesWe established a pentaplex real-time reverse transcription PCR (rRT-PCR) assay (CII-ArboViroPlex rRT-PCR) for specific and sensitive detection of the African and American genotypes of ZIKV, all four serotypes of DENV, CHIKV, WNV and a housekeeping gene as internal control in single reaction. STUDY

designSpecific primers and probe sets were designed for ZIKV, DENV, CHIKV, WNV and RNase P (housekeeping gene) and tested for in-vitro transcribed RNA standards, virus cultures, clinical samples positive for ZIKV, DENV, CHIKV and WNV and limit of detection (LOD) were determined for each. Results Using ten-fold serially diluted in-vitro transcribed RNA, CII- ArboViroPlex rRT-PCR assay has LOD of 100 RNA copies/reaction (Rn) for ZIKV in serum or urine, 100 RNA copies/Rn for DENV in serum, and 10 RNA copies/Rn for CHIKV and WNV in serum. LODs from sera spiked with quantitated viral stocks were 2.6 × 10

conclusionsThe CII-ArboViroPlex rRT-PCR assay is a quantitative one-step pentaplex rRT-PCR assay for the molecular detection and differential diagnosis of ZIKV, DENV, CHIKV, WNV and a human housekeeping gene control in a single- PCR reaction.

Indexed as

Cell LineChikungunya FeverChikungunya virusDengueDengue VirusGenes, EssentialHumansLimit of DetectionMolecular Diagnostic TechniquesMultiplex Polymerase Chain ReactionReal-Time Polymerase Chain ReactionRNA, ViralWest Nile FeverWest Nile virusZika VirusZika Virus InfectionRNA, ViralArbovirusesChikungunya virusCII-ArboViroPlex rRT PCRDengue virusqPCRWest nile virusZika virus

Identifiers

PMID31557664
PMCPMC7032662

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.