Evidence map›Paper›PMID 31557632›Full record

ArticleMedical image analysis2019

How many models/atlases are needed as priors for capturing anatomic population variations?

Ze Jin, Jayaram K Udupa, Drew A Torigian

Abstract read
In one paragraph

Article in Medical image analysis, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Stratification of Lung Cancer Risk with Thoracic Imaging Phenotypes.Proceedings of SPIE--the International Society for Optical Engineering · 2023
    Article
  2. Article
  3. Anatomy Recognition in CT Images of Head & Neck Region via Precision Atlases.Proceedings of SPIE--the International Society for Optical Engineering · 2021
    Article
  4. Obtaining the potential number of object models/atlases needed in medical image analysis.Proceedings of SPIE--the International Society for Optical Engineering · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ze JinMedical Image Processing Group, Department of Radiology, University of Pennsylvania, Philadelphia, United States.
Jayaram K UdupaMedical Image Processing Group, Department of Radiology, University of Pennsylvania, Philadelphia, United States. Electronic address: jay@pennmedicine.upenn.edu.
Drew A TorigianMedical Image Processing Group, Department of Radiology, University of Pennsylvania, Philadelphia, United States.

Funding

Automated Object Contouring Methods & Software for Radiotherapy PlanningR42CA199735 · NCI · QUANTITATIVE RADIOLOGY SOLUTIONS, LLC · PI OWENS, STEVE, UDUPA, JAYARAM K · 2018 to 2020
$1.9M
NCI NIH HHS R42 CA199735
6 · The paper itself

Abstract

Many medical image processing and analysis operations can benefit a great deal from prior information encoded in the form of models/atlases to capture variations over a population in form, shape, anatomic layout, and image appearance of objects. However, two fundamental questions have not been addressed in the literature: "How many models/atlases are needed for optimally encoding prior information to address the differing body habitus factor in that population?" and "Images of how many subjects in the given population are needed to optimally harness prior information?" We propose a method to seek answers to these questions. We assume that there is a well-defined body region of interest and a subject population under consideration, and that we are given a set of representative images of the body region for the population. After images are trimmed to the exact body region, a hierarchical agglomerative clustering algorithm partitions the set of images into a specified number of groups by using pairwise image (dis)similarity as a cost function. Optionally the images may be pre-registered among themselves prior to this partitioning operation. We define a measure called Residual Dissimilarity (RD) to determine the goodness of each partition. We then ascertain how RD varies as a function of the number of elements in the partition for finding the optimum number(s) of groups. Breakpoints in this function are taken as the recommended number of groups/models/atlases. Our results from analysis of sizeable CT data sets of adult patients from two body regions - thorax (346) and head and neck (298) - can be summarized as follows. (1) A minimum of 5 to 8 groups (or models/atlases) seems essential to properly capture information about differing anatomic forms and body habitus. (2) A minimum of 150 images from different subjects in a population seems essential to cover the anatomical variations for a given body region. (3) In grouping, body habitus variations seem to override differences due to other factors such as gender, with/without contrast enhancement in image acquisition, and presence of moderate pathology. This method may be helpful for constructing high quality models/atlases from a sufficiently large population of images and in optimally selecting the training image sets needed in deep learning strategies.

Indexed as

Anatomic VariationAtlases as TopicDeep LearningTomography, X-Ray ComputedDatasets as TopicHeadHumansImage Processing, Computer-AssistedNeckThoraxHead and neck CTHierarchical agglomerative clusteringImage groupingModel/atlas based methodsThoracic CT

Identifiers

PMID31557632
PMCPMC8647659

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.