Evidence map›Paper›PMID 31557439›Full record

ArticleJournal of the American Chemical Society2019

Engineering the hCRBPII Domain-Swapped Dimer into a New Class of Protein Switches.

Alireza Ghanbarpour, Cody Pinger, Rahele Esmatpour Salmani, Zahra Assar, Elizabeth M Santos, Meisam Nosrati, Kathryn Pawlowski, Dana Spence, Chrysoula Vasileiou, Xiangshu Jin and 2 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Photoisomerization detected in a fully wavelength-tunable rhodopsin mimic system.Acta crystallographica. Section D, Structural biology · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Protein Assembly by Design.Chemical reviews · 2021
    Review
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Alireza GhanbarpourDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.
Cody PingerDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.ORCID 0000-0003-0636-828X
Rahele Esmatpour SalmaniDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.
Zahra AssarDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.
Elizabeth M SantosDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.
Meisam NosratiDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.
Kathryn PawlowskiDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.
Dana SpenceDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.
Chrysoula VasileiouDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.
Xiangshu JinDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.
Babak BorhanDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.ORCID 0000-0002-3193-0732
James H GeigerDepartment of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States.

Funding

Protein/Chromphore Interactions via Protein Design: Interrogation and ApplicationR01GM101353 · NIGMS · MICHIGAN STATE UNIVERSITY · PI BORHAN, BABAK, GEIGER, JAMES H · 2013 to 2022
$2.6M
NIGMS NIH HHS R01 GM101353
6 · The paper itself

Abstract

Protein conformational switches or allosteric proteins play a key role in the regulation of many essential biological pathways. Nonetheless, the implementation of protein conformational switches in protein design applications has proven challenging, with only a few known examples that are not derivatives of naturally occurring allosteric systems. We have discovered that the domain-swapped (DS) dimer of hCRBPII undergoes a large and robust conformational change upon retinal binding, making it a potentially powerful template for the design of protein conformational switches. Atomic resolution structures of the apo- and holo-forms illuminate a simple, mechanical movement involving sterically driven torsion angle flipping of two residues that drive the motion. We further demonstrate that the conformational "readout" can be altered by addition of cross-domain disulfide bonds, also visualized at atomic resolution. Finally, as a proof of principle, we have created an allosteric metal binding site in the DS dimer, where ligand binding results in a reversible 5-fold loss of metal binding affinity. The high resolution structure of the metal-bound variant illustrates a well-formed metal binding site at the interface of the two domains of the DS dimer and confirms the design strategy for allosteric regulation.

Indexed as

Allosteric RegulationBinding SitesCircular DichroismCrystallography, X-RayDisulfidesLigandsMetalsModels, MolecularMutationProtein DomainsProtein EngineeringProtein MultimerizationRetinol-Binding Proteins, CellularThreonineTyrosineZincDisulfidesLigandsMetalsRBP2 protein, humanRetinol-Binding Proteins, CellularThreonineTyrosineZinc

Identifiers

PMID31557439
PMCPMC7358038

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.