Evidence map›Paper›PMID 31557222›Full record

ArticlePloS one2019

CRISPR-based tools for targeted transcriptional and epigenetic regulation in plants.

Joanne E Lee, Manuela Neumann, Daniel Iglesias Duro, Markus Schmid

Open access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 110 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Joanne E LeeUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden.
Manuela NeumannMax Planck Institute for Developmental Biology, Department of Molecular Biology, Tübingen, Germany.ORCID 0000-0003-2778-3028
Daniel Iglesias DuroUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden.
Markus SchmidUmeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, Sweden.ORCID 0000-0002-0068-2967
Umeå Plant Science Centre · SEBeijing Forestry University · CNMax Planck Institute for Developmental Biology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Programmable gene regulators that can modulate the activity of selected targets in trans are a useful tool for probing and manipulating gene function. CRISPR technology provides a convenient method for gene targeting that can also be adapted for multiplexing and other modifications to enable strong regulation by a range of different effectors. We generated a vector toolbox for CRISPR/dCas9-based targeted gene regulation in plants, modified with the previously described MS2 system to amplify the strength of regulation, and using Golden Gate-based cloning to enable rapid vector assembly with a high degree of flexibility in the choice of promoters, effectors and targets. We tested the system using the floral regulator FLOWERING LOCUS T (FT) as a target and a range of different effector domains including the transcriptional activator VP64, the H3K27 acetyltransferase p300 and the H3K9 methyltransferase KRYPTONITE. When transformed into Arabidopsis thaliana, several of the constructs caused altered flowering time phenotypes that were associated with changes in FT expression and/or epigenetic status, thus demonstrating the effectiveness of the system. The MS2-CRISPR/dCas9 system can be used to modulate transcriptional activity and epigenetic status of specific target genes in plants, and provides a versatile tool that can easily be used with different targets and types of regulation for a range of applications.

Indexed as

Gene Expression Regulation, PlantTranscriptional ActivationArabidopsisArabidopsis ProteinsCRISPR-Cas SystemsEpigenesis, GeneticFeasibility StudiesGenetic EngineeringGenetic VectorsHistone CodePlants, Genetically ModifiedPromoter Regions, GeneticArabidopsis ProteinsFT protein, Arabidopsis

Identifiers

PMID31557222
PMCPMC6762090
OpenAlexW2976422813

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.