Evidence map›Paper›PMID 31557001›Full record

ArticleBioconjugate chemistry2019

Flavin Binding Allosteric Aptamer with Noncovalent Labeling for miR Sensing.

A Gee, J A Grennell, S Sitaula, J Jayawickramarajah, M F Ali

Open access · greenAbstract read
In one paragraph

Article in Bioconjugate chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

A GeeDepartment of Chemistry , Xavier University of Louisiana , 1 Drexel Drive , New Orleans , Louisiana 70125 , United States.
J A GrennellDepartment of Chemistry , Xavier University of Louisiana , 1 Drexel Drive , New Orleans , Louisiana 70125 , United States.
S SitaulaDepartment of Chemistry , Xavier University of Louisiana , 1 Drexel Drive , New Orleans , Louisiana 70125 , United States.
J JayawickramarajahDepartment of Chemistry , Tulane University , 2015 Percival Stern Hall , New Orleans , Louisiana 70118 , United States.ORCID 0000-0001-5271-1523
M F AliDepartment of Chemistry , Xavier University of Louisiana , 1 Drexel Drive , New Orleans , Louisiana 70125 , United States.ORCID 0000-0002-4289-5944
Xavier University of Louisiana · USTulane University · US

Funding

Building Integrated Pathways to Independence for Diverse Biomedical ResearchersUL1GM118967 · NIGMS · XAVIER UNIVERSITY OF LOUISIANA · PI FOROOZESH, MARYAM, GIGUETTE, MARGUERITE · 2015 to 2023
$17.7M
PROJECT PATHWAYS: STUDENT TRAINING CORETL4GM118968 · NIGMS · XAVIER UNIVERSITY OF LOUISIANA · PI FOROOZESH, MARYAM, GIGUETTE, MARGUERITE · 2015 to 2023
$9.2M
Project Pathways: Research Enrichment CoreRL5GM118966 · NIGMS · XAVIER UNIVERSITY OF LOUISIANA · PI FOROOZESH, MARYAM, GIGUETTE, MARGUERITE · 2015 to 2023
$6.6M
Detection strategies:Aptamer-based target recognition to turn-on GOx signalingSC2GM103704 · NIGMS · XAVIER UNIVERSITY OF LOUISIANA · PI ALI, MEHNAAZ FATIMA · 2013 to 2015
$424k
NIGMS NIH HHS RL5 GM118966NIGMS NIH HHS SC2 GM103704NIGMS NIH HHS TL4 GM118968NIGMS NIH HHS UL1 GM118967
6 · The paper itself

Abstract

Modular allosteric aptamers with discrete recognition and signaling regions provide a facile method of carrying out label-free detection by forgoing complex target labeling requirements. Herein, we describe the design and function of an aptamer scaffold capable of forming a hairpin loop in the presence of FAD (the signaling trigger). The aptamer includes a recognition region for the microRNA (miR) Let-7i. Upon selective miR hybridization, the aptamer undergoes a conformational shift to release FAD and thus produce a measurable response. As a result, the described method can sensitively and selectively detect miR Let-7i with a wide linear range of 0.1 pM to 1 μM and a detection limit of 150 fM. Additionally, this strategy was able to selectively discriminate between sequences with 1- and 2-nucleotide (nt) differences.

Indexed as

Allosteric SiteAptamers, NucleotideBiosensing TechniquesFlavin-Adenine DinucleotideHumansMicroRNAsNucleic Acid ConformationAptamers, NucleotideFlavin-Adenine DinucleotideMicroRNAsmirnlet7 microRNA, human

Identifiers

PMID31557001
PMCPMC7181961
OpenAlexW2976471565

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.