Evidence map›Paper›PMID 31554845›Full record

ArticleScientific reports2019

Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection.

Abhijeet R Sonawane, Liang Tian, Chin-Yi Chu, Xing Qiu, Lu Wang, Jeanne Holden-Wiltse, Alex Grier, Steven R Gill, Mary T Caserta, Ann R Falsey and 7 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05164692 (Application of LiveSpo Navax in Treatment of Acute Respiratory Disease in Children Infected With Respiratory Syncytial Virus), which is not on this map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05164692 nacompletednot on this mapstarted 2020, after this paper: background citation

Application of LiveSpo Navax in Treatment of Acute Respiratory Disease in Children Infected With Respiratory Syncytial Virus

TypeinterventionalSponsorNational Children's Hospital, VietnamRan2020 to 2021Enrolled100ConditionsAcute Respiratory Tract InfectionsArmsLiveSpo Navax, 0.9% NaCl physiological saline
3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. Gingipain proteases from the bacteriumProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Challenges and Opportunities in Single-Sample Network Modeling.bioRxiv : the preprint server for biology · 2026
    Article
  4. bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Observational
  7. Review
  8. Microbiome and micronutrient in ALS: From novel mechanisms to new treatments.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2024
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Frontiers in cellular and infection microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 2 countries.

Abhijeet R SonawaneChanning Division of Network Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, 02115, USA.
Liang TianChanning Division of Network Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, 02115, USA.
Chin-Yi ChuDepartments of Pediatrics, University of Rochester Medical Center, Rochester, NY, 14642, USA.ORCID http://orcid.org/0000-0002-2390-3937
Xing QiuDepartment of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY, 14642, USA.ORCID http://orcid.org/0000-0002-2330-3544
Lu WangDepartment of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Jeanne Holden-WiltseDepartment of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, NY, 14642, USA.ORCID http://orcid.org/0000-0003-2694-7465
Alex GrierDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Steven R GillDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Mary T CasertaDepartments of Pediatrics, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Ann R FalseyDepartment of Medicine, University of Rochester Medical Center, Rochester, NY, 14642, USA.
David J TophamDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Edward E WalshDepartment of Medicine, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Thomas J MarianiDepartments of Pediatrics, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Scott T WeissChanning Division of Network Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, 02115, USA.
Edwin K SilvermanChanning Division of Network Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, 02115, USA.
Kimberly GlassChanning Division of Network Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, 02115, USA. kimberly.glass@channing.harvard.edu.
Yang-Yu LiuChanning Division of Network Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, 02115, USA. yyl@channing.harvard.edu.ORCID http://orcid.org/0000-0003-2728-4907
University of Rochester Medical Center · USBrigham and Women's Hospital · US

Funding

VISUAL INDICES OF NEUROTOXICITYP30ES001247 · NIEHS · UNIVERSITY OF ROCHESTER · PI Martha Susiarjo · 1985 to 2026
$42.8M
The University of Rochester's Clinical and Translational Science InstituteUL1TR002001 · NCATS · UNIVERSITY OF ROCHESTER · PI WILSON, KAREN M., ZAND, MARTIN S · 2016 to 2024
$34.6M
YOHIMBINE CHALLENGE IN PARKINSONIAN PATIENTS WITH PANIC DISORDERM01RR000044 · NCRR · UNIVERSITY OF ROCHESTER · PI GUZICK, DAVID S · 1985 to 2006
$13.8M
NCATS NIH HHS UL1 TR002001NCRR NIH HHS M01 RR000044NIAID NIH HHS HHSN272201200005CNIEHS NIH HHS P30 ES001247
6 · The paper itself

Abstract

Respiratory syncytial virus (RSV) is a major cause of lower respiratory tract infections and hospital visits during infancy and childhood. Although risk factors for RSV infection have been identified, the role of microbial species in the respiratory tract is only partially known. We aimed to understand the impact of interactions between the nasal microbiome and host transcriptome on the severity and clinical outcomes of RSV infection. We used 16 S rRNA sequencing to characterize the nasal microbiome of infants with RSV infection. We used RNA sequencing to interrogate the transcriptome of CD4

Indexed as

BacteriaCD4-Positive T-LymphocytesComputational BiologyFemaleGene Expression ProfilingGene Regulatory NetworksHaemophilus influenzaeHumansInfantMaleMicrobiotaNoseRespiratory Syncytial Virus InfectionsRNA, Ribosomal, 16SSequence Analysis, RNASeverity of Illness IndexRNA, Ribosomal, 16S

Identifiers

PMID31554845
PMCPMC6761288
OpenAlexW2975098802

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.