Evidence map›Paper›PMID 31554802›Full record

ArticleNature communications2019

Low expression of RNA sensors impacts Zika virus infection in the lower female reproductive tract.

Shahzada Khan, Irene Lew, Frank Wu, Linda Fritts, Krystal A Fontaine, Sakshi Tomar, Martin Trapecar, Hesham M Shehata, Melanie Ott, Christopher J Miller and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Shahzada KhanVirology and Immunology, Gladstone Institutes, San Francisco, CA, 94158, USA.ORCID http://orcid.org/0000-0003-2975-6621
Irene LewVirology and Immunology, Gladstone Institutes, San Francisco, CA, 94158, USA.
Frank WuVirology and Immunology, Gladstone Institutes, San Francisco, CA, 94158, USA.ORCID http://orcid.org/0000-0003-2583-9227
Linda FrittsCenter for Comparative Medicine, University of California, Davis, Davis, CA, 95616, USA.
Krystal A FontaineVirology and Immunology, Gladstone Institutes, San Francisco, CA, 94158, USA.
Sakshi TomarVirology and Immunology, Gladstone Institutes, San Francisco, CA, 94158, USA.ORCID http://orcid.org/0000-0001-5994-4178
Martin TrapecarVirology and Immunology, Gladstone Institutes, San Francisco, CA, 94158, USA.ORCID http://orcid.org/0000-0002-0860-8948
Hesham M ShehataVirology and Immunology, Gladstone Institutes, San Francisco, CA, 94158, USA.
Melanie OttVirology and Immunology, Gladstone Institutes, San Francisco, CA, 94158, USA.
Christopher J MillerCenter for Comparative Medicine, University of California, Davis, Davis, CA, 95616, USA.
Shomyseh SanjabiVirology and Immunology, Gladstone Institutes, San Francisco, CA, 94158, USA. sanjabi.shomyseh@gene.com.ORCID http://orcid.org/0000-0002-3097-9665
Gladstone Institutes · USUniversity of California, Davis · US

Funding

National Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Monica Gandhi · 1988 to 2026
$93.6M
Characterizing HIV latent reservoir in vivoDP2AI112244 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI SANJABI, SHOMYSEH · 2013 to 2013
$2.8M
Role of Lipid Droplets in Hepatitis C Virus InfectionR01AI097552 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI OTT, MELANIE MARIA · 2014 to 2018
$2.4M
EXTRAMULAR RESEARCH FACILITIES CONSTRUCTIONC06RR018928 · NCRR · J. DAVID GLADSTONE INSTITUTES · PI MAHLEY, ROBERT W. · 2003 to 2003
$2.1M
BD FACSAria II Flow CytometerS10RR028962 · NCRR · J. DAVID GLADSTONE INSTITUTES · PI CAVROIS, MARIELLE · 2011 to 2011
$544k
A NHP model for vaginal Zika Virus transmissionR21OD023818 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MILLER, CHRISTOPHER JAMES · 2016 to 2016
$312k
NCRR NIH HHS C06 RR018928NCRR NIH HHS S10 RR028962NIAID NIH HHS DP2 AI112244NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI097552NIH HHS P51 OD011107NIH HHS R21 OD023818ODCDC CDC HHS R21 OD023818U.S. Department of Health & Human Services | NIH | National Center for Research Resources (NCRR) RR18928
6 · The paper itself

Abstract

Innate immune responses to Zika virus (ZIKV) are dampened in the lower female reproductive tract (LFRT) compared to other tissues, but the mechanism that underlies this vulnerability is poorly understood. Using tissues from uninfected and vaginally ZIKV-infected macaques and mice, we show that low basal expression of RNA-sensing pattern recognition receptors (PRRs), or their co-receptors, in the LFRT contributes to high viral replication in this tissue. In the LFRT, ZIKV sensing provides limited protection against viral replication, and the sensors are also minimally induced after vaginal infection. While IFNα/β receptor signaling offers minimal protection in the LFRT, it is required to prevent dissemination of ZIKV to other tissues, including the upper FRT. Our findings support a role for RNA-sensing PRRs in the dampened innate immunity against ZIKV in the LFRT compared to other tissues and underlie potential implications for systemic dissemination upon heterosexual transmission of ZIKV in women.

Indexed as

AnimalsFemaleGene Expression Regulation, ViralGenitalia, FemaleHumansImmunity, InnateMacaca mulattaMice, Inbred C57BLMice, KnockoutReceptor, Interferon alpha-betaReceptors, Pattern RecognitionRNA, ViralToll-Like Receptor 3VaginaVirus ReplicationZika VirusReceptor, Interferon alpha-betaReceptors, Pattern RecognitionRNA, ViralTLR3 protein, mouseToll-Like Receptor 3

Identifiers

PMID31554802
PMCPMC6761111
OpenAlexW2976239435

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.