Evidence map›Paper›PMID 31554292›Full record

ArticleGenes2019

Comparison between the Transcriptomes of 'KDML105' Rice and a Salt-Tolerant Chromosome Segment Substitution Line.

Nopphawitchayaphong Khrueasan, Panita Chutimanukul, Kitiporn Plaimas, Teerapong Buaboocha, Meechai Siangliw, Theerayut Toojinda, Luca Comai, Supachitra Chadchawan

Open access · goldAbstract read
In one paragraph

Article in Genes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Nopphawitchayaphong KhrueasanCenter of Excellence in Environment and Plant Physiology, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10300, Thailand. sharesci@gmail.com.
Panita ChutimanukulCenter of Excellence in Environment and Plant Physiology, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10300, Thailand. priggerr@gmail.com.
Kitiporn PlaimasAdvanced Virtual and Intelligent Computing (AVIC) Center, Department of Mathematics and Computer Science, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand. kitiporn.p@chula.ac.th.ORCID 0000-0002-0416-8316
Teerapong BuaboochaMolecular Crop Research Unit, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand. teerapong.b@chula.ac.th.
Meechai SiangliwRice Gene Discovery Unit, National Center for Genetic Engineering and Biotechnology, Kasetsart University, Kamphangsaen Campus, Nakhonpathom 73140, Thailand. meechai.siangliw@gmail.com.
Theerayut ToojindaRice Gene Discovery Unit, National Center for Genetic Engineering and Biotechnology, Kasetsart University, Kamphangsaen Campus, Nakhonpathom 73140, Thailand. toojindatheerayut@gmail.com.
Luca ComaiDepartment of Plant Biology, UC Davis Genome Center, UC Davis, Davis, CA 95616, USA. luca.comai@gmail.com.
Supachitra ChadchawanCenter of Excellence in Environment and Plant Physiology, Department of Botany, Faculty of Science, Chulalongkorn University, Bangkok 10300, Thailand. supachitra.c@chula.ac.th.ORCID 0000-0001-5201-9051
Chulalongkorn University · THKasetsart University · THUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

'KDML105' rice, known as jasmine rice, is grown in northeast Thailand. The soil there has high salinity, which leads to low productivity. Chromosome substitution lines (CSSLs) with the 'KDML105' rice genetic background were evaluated for salt tolerance. CSSL18 showed the highest salt tolerance among the four lines tested. Based on a comparison between the CSSL18 and 'KDML105' transcriptomes, more than 27,000 genes were mapped onto the rice genome. Gene ontology enrichment of the significantly differentially expressed genes (DEGs) revealed that different mechanisms were involved in the salt stress responses between these lines. Biological process and molecular function enrichment analysis of the DEGs from both lines revealed differences in the two-component signal transduction system, involving

Indexed as

Chromosomes, PlantCytochrome P-450 Enzyme SystemGene Expression Regulation, PlantOryzaPhototropinsPlant ProteinsPyruvate Dehydrogenase Acetyl-Transferring KinaseSalt ToleranceTranscriptomeCytochrome P-450 Enzyme SystemPhototropinsPlant ProteinsPyruvate Dehydrogenase Acetyl-Transferring Kinasephototropinpyruvate dehydrogenase kinasetwo‐component signaling system

Identifiers

PMID31554292
PMCPMC6827086
OpenAlexW2976582658

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.