Evidence map›Paper›PMID 31554191›Full record

ArticleMolecules (Basel, Switzerland)2019

Computer-Aided Discovery of Small Molecule Inhibitors of Thymocyte Selection-Associated High Mobility Group Box Protein (TOX) as Potential Therapeutics for Cutaneous T-Cell Lymphomas.

Vibudh Agrawal, Mingwan Su, Yuanshen Huang, Michael Hsing, Artem Cherkasov, Youwen Zhou

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Vibudh AgrawalVancouver Prostate Centre, Department of Urologic Sciences, Faculty of Medicine, University of British Columbia, 2660 Oak Street, Vancouver, BC V6H 3Z6, Canada. vibudh2209@gmail.com.
Mingwan SuDepartment of Dermatology and Skin Science, University of British Columbia, Vancouver, BC V5Z 4E8, Canada. amwsu@yahoo.com.
Yuanshen HuangDepartment of Dermatology and Skin Science, University of British Columbia, Vancouver, BC V5Z 4E8, Canada. yuanshen.huang@mail.utoronto.ca.
Michael HsingVancouver Prostate Centre, Department of Urologic Sciences, Faculty of Medicine, University of British Columbia, 2660 Oak Street, Vancouver, BC V6H 3Z6, Canada. mhsing@prostatecentre.com.ORCID 0000-0003-3437-7669
Artem CherkasovVancouver Prostate Centre, Department of Urologic Sciences, Faculty of Medicine, University of British Columbia, 2660 Oak Street, Vancouver, BC V6H 3Z6, Canada. acherkasov@prostatecentre.com.
Youwen ZhouDepartment of Dermatology and Skin Science, University of British Columbia, Vancouver, BC V5Z 4E8, Canada. youwen.zhou@ubc.ca.
University of British Columbia · CA

Funding

CIHR MOP-115138, PJT-155991
6 · The paper itself

Abstract

Cutaneous T-cell lymphomas (CTCL) are the most common primary lymphomas of the skin. We have previously identified thymocyte selection-associated high mobility group (HMG) box protein (TOX) as a promising drug target in CTCL; however, there are currently no small molecules able to directly inhibit TOX. We aimed to address this unmet opportunity by developing anti-TOX therapeutics with the use of computer-aided drug discovery methods. The available NMR-resolved structure of the TOX protein was used to model its DNA-binding HMG-box domain. To investigate the druggability of the corresponding protein-DNA interface on TOX, we performed a pilot virtual screening of 200,000 small molecules using in silico docking and identified 'hot spots' for drug-binding on the HMG-box domain. We then performed a large-scale virtual screening of 7.6 million drug-like compounds that were available from the ZINC15 database. As a result, a total of 140 top candidate compounds were selected for subsequent in vitro validation. Of those, 18 small molecules have been characterized as selective TOX inhibitors.

Indexed as

Drug DesignAnimalsAntineoplastic AgentsCell Line, TumorCell ProliferationDrug DiscoveryHigh Mobility Group ProteinsHumansLymphoma, T-Cell, CutaneousMiceMolecular Docking SimulationMolecular Dynamics SimulationProtein BindingQuantitative Structure-Activity RelationshipSmall Molecule LibrariesAntineoplastic AgentsHigh Mobility Group ProteinsSmall Molecule LibrariesTOX protein, humancomputer-aided drug designcutaneous T cell lymphomaHMG-box domainsmall molecule inhibitorsTOX

Identifiers

PMID31554191
PMCPMC6803922
OpenAlexW2975310574

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.