Evidence map›Paper›PMID 31553917›Full record

ArticleCell reports2019

Functional Analysis of the Replication Fork Proteome Identifies BET Proteins as PCNA Regulators.

Sarah R Wessel, Kareem N Mohni, Jessica W Luzwick, Huzefa Dungrawala, David Cortez

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 124 citations in OpenAlex.

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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sarah R WesselDepartment of Biochemistry, Vanderbilt University, Nashville, TN 37232, USA.
Kareem N MohniDepartment of Biochemistry, Vanderbilt University, Nashville, TN 37232, USA.
Jessica W LuzwickDepartment of Biochemistry, Vanderbilt University, Nashville, TN 37232, USA.
Huzefa DungrawalaDepartment of Biochemistry, Vanderbilt University, Nashville, TN 37232, USA.
David CortezDepartment of Biochemistry, Vanderbilt University, Nashville, TN 37232, USA. Electronic address: david.cortez@vanderbilt.edu.
Vanderbilt University · US

Funding

BIOCHEMICAL &CHEMICAL TRAINING FOR CANCER RESEARCHT32CA009582 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 1987 to 2026
$8.8M
Analysis of the Replication Stress ResponseR01GM116616 · NIGMS · VANDERBILT UNIVERSITY · PI David K Cortez · 2015 to 2026
$5.4M
Mechanisms and Functions of ATR signalingR01CA239161 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 2019 to 2026
$3.3M
Identification and characterization of the replication fork proteomeF32GM126646 · NIGMS · VANDERBILT UNIVERSITY · PI WESSEL, SARAH · 2017 to 2017
$57k
NCI NIH HHS R01 CA239161NCI NIH HHS T32 CA009582NIGMS NIH HHS F32 GM126646NIGMS NIH HHS R01 GM116616
6 · The paper itself

Abstract

Identifying proteins that function at replication forks is essential to understanding DNA replication, chromatin assembly, and replication-coupled DNA repair mechanisms. Combining quantitative mass spectrometry in multiple cell types with stringent statistical cutoffs, we generated a high-confidence catalog of 593 proteins that are enriched at replication forks and nascent chromatin. Loss-of-function genetic analyses indicate that 85% yield phenotypes that are consistent with activities in DNA and chromatin replication or already have described functions in these processes. We illustrate the value of this resource by identifying activities of the BET family proteins BRD2, BRD3, and BRD4 in controlling DNA replication. These proteins use their extra-terminal domains to bind and inhibit the ATAD5 complex and thereby control the amount of PCNA on chromatin.

Indexed as

HumansNuclear ProteinsProliferating Cell Nuclear AntigenProteomeNuclear ProteinsProliferating Cell Nuclear AntigenProteomeATAD5BET domainchromatinDNA replicationiPONDPCNAproteomicsreplisome

Identifiers

PMID31553917
PMCPMC6878991
OpenAlexW2976701571

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.