Evidence map›Paper›PMID 31553822›Full record

ArticlePlant biotechnology journal2020

The retromer protein ZmVPS29 regulates maize kernel morphology likely through an auxin-dependent process(es).

Lin Chen, Yong-Xiang Li, Chunhui Li, Yunsu Shi, Yanchun Song, Dengfeng Zhang, Haiyang Wang, Yu Li, Tianyu Wang

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

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  16. Identification of a candidate gene underlying qHKW3, a QTL for hundred-kernel weight in maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  17. Genetic Architecture of Grain Yield-Related Traits in Sorghum and Maize.International journal of molecular sciences · 2022
    Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Lin ChenInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID 0000-0002-9698-0618
Yong-Xiang LiInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Chunhui LiInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Yunsu ShiInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Yanchun SongInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Dengfeng ZhangInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Haiyang WangSchool of Life Sciences, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China.
Yu LiInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Tianyu WangInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Kernel size and morphology are two important yield-determining traits in maize, but their molecular and genetic mechanisms are poorly characterized. Here, we identified a major QTL, qKM4.08, which explains approximately 24.20% of the kernel morphology variance in a recombinant population derived from two elite maize inbred lines, Huangzaosi (HZS, round kernel) and LV28 (slender kernel). Positional cloning and transgenic analysis revealed that qKM4.08 encodes ZmVPS29, a retromer complex component. Compared with the ZmVPS29 HZS allele, the ZmVPS29 LV28 allele showed higher expression in developing kernels. Overexpression of ZmVPS29 conferred a slender kernel morphology and increased the yield per plant in different maize genetic backgrounds. Sequence analysis revealed that ZmVPS29 has been under purifying selection during maize domestication. Association analyses identified two significant kernel morphology-associated polymorphic sites in the ZmVPS29 promoter region that were significantly enriched in modern maize breeding lines. Further study showed that ZmVPS29 increased auxin accumulation during early kernel development by enhancing auxin biosynthesis and transport and reducing auxin degradation and thereby improved kernel development. Our results suggest that ZmVPS29 regulates kernel morphology, most likely through an auxin-dependent process(es).

Indexed as

DomesticationIndoleacetic AcidsPhenotypePlant BreedingPlant ProteinsPlants, Genetically ModifiedSeedsVesicular Transport ProteinsZea maysIndoleacetic AcidsPlant ProteinsVesicular Transport Proteinsauxinkernel morphologymaizeretromerZmVPS29

Identifiers

PMID31553822
PMCPMC7061865

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.