Evidence map›Paper›PMID 31553721›Full record

ArticlePLoS genetics2019

Unraveling the functional role of the orphan solute carrier, SLC22A24 in the transport of steroid conjugates through metabolomic and genome-wide association studies.

Sook Wah Yee, Adrian Stecula, Huan-Chieh Chien, Ling Zou, Elena V Feofanova, Marjolein van Borselen, Kit Wun Kathy Cheung, Noha A Yousri, Karsten Suhre, Jason M Kinchen and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
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  9. Article
  10. Article
  11. Sex Hormone Candidate Gene Polymorphisms Are Associated with Endometriosis.International journal of molecular sciences · 2022
    Article
  12. Review
  13. Drug metabolism and disposition: the biological fate of chemicals · 2021
    Article
  14. Article
  15. Review
  16. Review
  17. Deorphaning a solute carrier 22 family member, SLC22A15, through functional genomic studies.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  18. Article
  19. International journal of molecular sciences · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Sook Wah YeeDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, California, United States of America.
Adrian SteculaDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, California, United States of America.
Huan-Chieh ChienDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, California, United States of America.
Ling ZouDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, California, United States of America.
Elena V FeofanovaHuman Genetics Center, University of Texas Health Science Center at Houston, Houston, Texas, United States of America.ORCID 0000-0003-1428-7199
Marjolein van BorselenDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, California, United States of America.ORCID 0000-0002-1252-4325
Kit Wun Kathy CheungDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, California, United States of America.
Noha A YousriGenetic Medicine, Weill Cornell Medicine-Qatar, Doha, Qatar.
Karsten SuhrePhysiology and Biophysics, Weill Cornell Medicine-Qatar, Doha, Qatar.
Jason M KinchenMetabolon, Inc, Durham, United States of America.
Eric BoerwinkleHuman Genetics Center, University of Texas Health Science Center at Houston, Houston, Texas, United States of America.
Roshanak IrannejadThe Cardiovascular Research Institute, University of California, San Francisco, California, United States of America.
Bing YuHuman Genetics Center, University of Texas Health Science Center at Houston, Houston, Texas, United States of America.
Kathleen M GiacominiDepartment of Bioengineering and Therapeutic Sciences, University of California San Francisco, California, United States of America.ORCID 0000-0001-8041-5430
University of California, San Francisco · USThe University of Texas Health Science Center at Houston · USWeill Cornell Medical College in Qatar · QABaylor College of Medicine · USMetabolon (United States) · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Genomic Architecture of Common Disease in Diverse Populations: WGS of Ongoing Hemorrhagic Stroke Study SupplementUM1HG008898 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2016 to 2020
$77.0M
Building on GWAS for NHLBI-disease: the CHARGE consortiumRC2HL102419 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BOERWINKLE, ERIC A. · 2009 to 2010
$27.6M
Equipment Supplement for Discovery of Pharmacogenomic Biomarkers for OATP1B1 and OATP1B3R01GM117163 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FLOREZ, JOSE CARLOS, HEDDERSON, MONIQUE MARIE · 2015 to 2023
$5.5M
Drug-Vitamin Interactions Mediated by the Thiamine Transporter, SLC19A3R01DK108722 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GIACOMINI, KATHLEEN M, GREENBERG, ANDREW S · 2017 to 2020
$2.6M
GWA for Gene-Environment Interaction Effects Influencing CHDU01HG004402 · NHGRI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BOERWINKLE, ERIC A. · 2007 to 2009
$1.6M
Role of endocytosis in beta-adrenergic receptors signaling in cardiomyocytesR00HL122508 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI IRANNEJAD, ROSHANAK · 2017 to 2019
$747k
NHGRI NIH HHS U01 HG004402NHGRI NIH HHS U54 HG003273NHGRI NIH HHS UM1 HG008898NHLBI NIH HHS HHSN268201700001CNHLBI NIH HHS HHSN268201700001INHLBI NIH HHS HHSN268201700002CNHLBI NIH HHS HHSN268201700002INHLBI NIH HHS HHSN268201700003CNHLBI NIH HHS HHSN268201700003INHLBI NIH HHS HHSN268201700004CNHLBI NIH HHS HHSN268201700004INHLBI NIH HHS HHSN268201700005CNHLBI NIH HHS HHSN268201700005INHLBI NIH HHS R00 HL122508NHLBI NIH HHS RC2 HL102419NIDDK NIH HHS R01 DK108722NIGMS NIH HHS R01 GM117163
6 · The paper itself

Abstract

Variation in steroid hormone levels has wide implications for health and disease. The genes encoding the proteins involved in steroid disposition represent key determinants of interindividual variation in steroid levels and ultimately, their effects. Beginning with metabolomic data from genome-wide association studies (GWAS), we observed that genetic variants in the orphan transporter, SLC22A24 were significantly associated with levels of androsterone glucuronide and etiocholanolone glucuronide (sentinel SNPs p-value <1x10-30). In cells over-expressing human or various mammalian orthologs of SLC22A24, we showed that steroid conjugates and bile acids were substrates of the transporter. Phylogenetic, genomic, and transcriptomic analyses suggested that SLC22A24 has a specialized role in the kidney and appears to function in the reabsorption of organic anions, and in particular, anionic steroids. Phenome-wide analysis showed that functional variants of SLC22A24 are associated with human disease such as cardiovascular diseases and acne, which have been linked to dysregulated steroid metabolism. Collectively, these functional genomic studies reveal a previously uncharacterized protein involved in steroid homeostasis, opening up new possibilities for SLC22A24 as a pharmacological target for regulating steroid levels.

Indexed as

AndrosteroneAnimalsBiological TransportGenome-Wide Association StudyHEK293 CellsHumansMetabolomicsModels, MolecularOrganic Cation Transport ProteinsPhylogenyPolymorphism, Single NucleotideSteroidsSymportersAndrosteroneandrosterone glucuronideOrganic Cation Transport ProteinsSLC22A4 protein, humanSteroidsSymporters

Identifiers

PMID31553721
PMCPMC6760779
OpenAlexW2976924576

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.