Evidence map›Paper›PMID 31553440›Full record

ArticleGenome biology and evolution2019

Genome of the Parasitoid Wasp Diachasma alloeum, an Emerging Model for Ecological Speciation and Transitions to Asexual Reproduction.

Eric S Tvedte, Kimberly K O Walden, Kyle E McElroy, John H Werren, Andrew A Forbes, Glen R Hood, John M Logsdon, Jeffrey L Feder, Hugh M Robertson

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 52 citations in OpenAlex.

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  11. Whole-genome sequencing analysis and protocol for RNA interference of the endoparasitoid wasp Asobara japonica.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Eric S TvedteDepartment of Biology, University of Iowa, IA.
Kimberly K O WaldenDepartment of Entomology, University of Illinois at Urbana-Champaign, IL.
Kyle E McElroyDepartment of Biology, University of Iowa, IA.
John H WerrenDepartment of Biology, University of Rochester, NY.
Andrew A ForbesDepartment of Biology, University of Iowa, IA.
Glen R HoodDepartment of Biological Sciences, Wayne State University, Detroit, MI.
John M LogsdonDepartment of Biology, University of Iowa, IA.
Jeffrey L FederDepartment of Biological Sciences, University of Notre Dame, IN.
Hugh M RobertsonDepartment of Entomology, University of Illinois at Urbana-Champaign, IL.
University of Iowa · USUniversity of Illinois Urbana-Champaign · USUniversity of Notre Dame · USUniversity of Rochester · USWayne State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Parasitoid wasps are among the most speciose animals, yet have relatively few available genomic resources. We report a draft genome assembly of the wasp Diachasma alloeum (Hymenoptera: Braconidae), a host-specific parasitoid of the apple maggot fly Rhagoletis pomonella (Diptera: Tephritidae), and a developing model for understanding how ecological speciation can "cascade" across trophic levels. Identification of gene content confirmed the overall quality of the draft genome, and we manually annotated ∼400 genes as part of this study, including those involved in oxidative phosphorylation, chemosensation, and reproduction. Through comparisons to model hymenopterans such as the European honeybee Apis mellifera and parasitoid wasp Nasonia vitripennis, as well as a more closely related braconid parasitoid Microplitis demolitor, we identified a proliferation of transposable elements in the genome, an expansion of chemosensory genes in parasitoid wasps, and the maintenance of several key genes with known roles in sexual reproduction and sex determination. The D. alloeum genome will provide a valuable resource for comparative genomics studies in Hymenoptera as well as specific investigations into the genomic changes associated with ecological speciation and transitions to asexuality.

Indexed as

Genome, InsectAnimalsFemaleGenes, InsectGenetic SpeciationHymenopteraMaleModels, BiologicalReproduction, AsexualSex Determination ProcessesWaspschemosensory genesde novo genome assemblygenome evolutionHymenopterasequential speciation

Identifiers

PMID31553440
PMCPMC6781843
OpenAlexW2979311979

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.