Evidence map›Paper›PMID 31552786›Full record

ArticleChannels (Austin, Tex.)2019

Voltage vs. Ligand II: Structural insights of the intrinsic flexibility in cyclic nucleotide-gated channels.

Sergio Romero-Romero, Gustavo Martínez-Delgado, Daniel Balleza

Open access · goldAbstract read
In one paragraph

Article in Channels (Austin, Tex.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. CNG channel structure, function, and gating: a tale of conformational flexibility.Pflugers Archiv : European journal of physiology · 2021
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Sergio Romero-RomeroFacultad de Medicina, Departamento de Bioquímica, Universidad Nacional Autónoma de México, 04510 Mexico City, Mexico. Current address: Department of Biochemistry, University of Bayreuth , Bayreuth , Germany.ORCID 0000-0003-2144-7912
Gustavo Martínez-DelgadoLaboratorio de Genómica de Enfermedades Cardiovasculares, Instituto Nacional de Medicina Genómica , Mexico City , Mexico.ORCID 0000-0003-4655-3770
Daniel BallezaDepartamento de Química ICET, Universidad Autónoma de Guadalajara , Zapopan , Jalisco , Mexico.ORCID 0000-0002-6848-9135
National Institute of Genomic Medicine · MXUniversidad Autónoma de Guadalajara · MXUniversity of Bayreuth · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the preceding article, we present a flexibility analysis of the voltage-gated ion channel (VGIC) superfamily. In this study, we describe in detail the flexibility profile of the voltage-sensor domain (VSD) and the pore domain (PD) concerning the evolution of 6TM ion channels. In particular, we highlight the role of flexibility in the emergence of CNG channels and describe a significant level of sequence similarity between the archetypical VSD and the TolQ proteins. A highly flexible S4-like segment exhibiting Lys instead Arg for these membrane proteins is reported. Sequence analysis indicates that, in addition to this S4-like segment, TolQ proteins also show similarity with specific motifs in S2 and S3 from typical V-sensors. Notably, S3 flexibility profiles from typical VSDs and S3-like in TolQ proteins are also similar. Interestingly, TolQ from early divergent prokaryotes are comparatively more flexible than those in modern counterparts or true V-sensors. Regarding the PD, we also found that 2TM K

Indexed as

Amino Acid MotifsAmino Acid SequenceAquifexBacteriaBacterial ProteinsCyclic Nucleotide-Gated Cation ChannelsEvolution, MolecularLigandsMultigene FamilyNucleotides, CyclicProtein DomainsSequence AlignmentBacterial ProteinsCyclic Nucleotide-Gated Cation ChannelsLigandsNucleotides, CyclicCNG channelsLocal flexibilitypore domain; ; TolQvoltage sensor

Identifiers

PMID31552786
PMCPMC6768053
OpenAlexW2976770153

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.