Evidence map›Paper›PMID 31552586›Full record

ArticlePlant molecular biology2019

OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.

Takanori Kobayashi, Asami Ozu, Subaru Kobayashi, Gynheung An, Jong-Seong Jeon, Naoko K Nishizawa

Open access · hybridAbstract read
In one paragraph

Article in Plant molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
14.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 116 citations in OpenAlex.

  1. Article
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  7. FScientific reports · 2025
    Article
  8. Review
  9. Article
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  11. Article
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  13. Article
  14. Article
  15. Iron Nutrition in Plants: Towards a New Paradigm?Plants (Basel, Switzerland) · 2023
    Review
  16. Review
  17. Iron sensing in plants.Frontiers in plant science · 2023
    Review
  18. The bHLH Transcription Factor OsbHLH057 Regulates Iron Homeostasis in Rice.International journal of molecular sciences · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Takanori KobayashiResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, 1-308 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan. abkoba@ishikawa-pu.ac.jp.ORCID http://orcid.org/0000-0001-7118-6955
Asami OzuResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, 1-308 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan.
Subaru KobayashiResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, 1-308 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan.
Gynheung AnCrop Biotech Institute and Graduate School of Biotechnology, Kyung Hee University, Yongin, 17104, Korea.
Jong-Seong JeonCrop Biotech Institute and Graduate School of Biotechnology, Kyung Hee University, Yongin, 17104, Korea.
Naoko K NishizawaResearch Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, 1-308 Suematsu, Nonoichi, Ishikawa, 921-8836, Japan.
Ishikawa Prefectural University · JPKyung Hee University · KR

Funding

Japan Society for the Promotion of Sciences (JSPS) KAKENHI 15H01187Japan Society for the Promotion of Sciences (JSPS) KAKENHI 15H05617Japan Society for the Promotion of Sciences (JSPS) KAKENHI 16H04891Japan Society for the Promotion of Sciences (JSPS) KAKENHI 18H02115
6 · The paper itself

Abstract

key messageSubgroup IVc basic helix-loop-helix transcription factors OsbHLH058 and OsbHLH059 positively regulate major iron deficiency responses in rice in a similar but distinct manner, putatively under partial control by OsHRZs. Under low iron availability, plants transcriptionally induce the expression of genes involved in iron uptake and translocation. OsHRZ1 and OsHRZ2 ubiquitin ligases negatively regulate this iron deficiency response in rice. The basic helix-loop-helix (bHLH) transcription factor OsbHLH060 interacts with OsHRZ1, and positively regulates iron deficiency-inducible genes. However, the functions of three other subgroup IVc bHLH transcription factors in rice, OsbHLH057, OsbHLH058, and OsbHLH059, have not yet been characterized. In the present study, we investigated the functions of OsbHLH058 and OsbHLH059 related to iron deficiency response. OsbHLH058 expression was repressed under iron deficiency, whereas the expression of OsbHLH057 and OsbHLH060 was moderately induced. Yeast two-hybrid analysis indicated that OsbHLH058 interacts with OsHRZ1 and OsHRZ2 more strongly than OsbHLH060, whereas OsbHLH059 showed no interaction. An in vitro ubiquitination assay detected no OsbHLH058 and OsbHLH060 ubiquitination by OsHRZ1 and OsHRZ2. Transgenic rice lines overexpressing OsbHLH058 showed tolerance for iron deficiency and higher iron concentration in seeds. These lines also showed enhanced expression of many iron deficiency-inducible genes involved in iron uptake and translocation under iron-sufficient conditions. Conversely, OsbHLH058 knockdown lines showed susceptibility to iron deficiency and reduced expression of many iron deficiency-inducible genes. OsbHLH059 knockdown lines were also susceptible to iron deficiency, and formed characteristic brownish regions in iron-deficient new leaves. OsbHLH059 knockdown lines also showed reduced expression of many iron deficiency-inducible genes. These results indicate that OsbHLH058 and OsbHLH059 positively regulate major iron deficiency responses in a similar but distinct manner, and that this function may be partially controlled by OsHRZs.

Indexed as

Gene Expression Regulation, PlantIron DeficienciesBasic Helix-Loop-Helix ProteinsGene ExpressionGene Knockdown TechniquesOryzaPlant LeavesPlant ProteinsPlants, Genetically ModifiedSeedsBasic Helix-Loop-Helix ProteinsPlant ProteinsbHLH transcription factorHRZ ubiquitin ligaseIron deficiencyRice

Identifiers

PMID31552586
PMCPMC6814640
OpenAlexW2976856007

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.