Evidence map›Paper›PMID 31552266›Full record

ArticleFrontiers in molecular biosciences2019

Integrated Metabolomics-DNA Methylation Analysis Reveals Significant Long-Term Tissue-Dependent Directional Alterations in Aminoacyl-tRNA Biosynthesis in the Left Ventricle of the Heart and Hippocampus Following Proton Irradiation.

Eileen Ruth S Torres, Reed Hall, Gerd Bobe, Jaewoo Choi, Soren Impey, Carl Pelz, Jonathan R Lindner, Jan F Stevens, Jacob Raber

Open access · goldAbstract read
In one paragraph

Article in Frontiers in molecular biosciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Eileen Ruth S TorresDepartment of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, United States.
Reed HallDepartment of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, United States.
Gerd BobeLinus Pauling Institute, Oregon State University, Corvallis, OR, United States.
Jaewoo ChoiLinus Pauling Institute, Oregon State University, Corvallis, OR, United States.
Soren ImpeyOregon Stem Cell Center and Department of Pediatrics, Oregon Health & Science University, Portland, OR, United States.
Carl PelzOregon Stem Cell Center and Department of Pediatrics, Oregon Health & Science University, Portland, OR, United States.
Jonathan R LindnerOregon National Primate Research Center, Oregon Health & Science University, Portland, OR, United States.
Jan F StevensLinus Pauling Institute, Oregon State University, Corvallis, OR, United States.
Jacob RaberDepartment of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, United States.
Oregon Health & Science University · USOregon State University · US

Funding

Neuroscience of Aging, Neurodegeneration and Alzheimer’s DiseaseT32AG055378 · NIA · OREGON HEALTH & SCIENCE UNIVERSITY · PI JACOB RABER, HENRYK F URBANSKI · 2018 to 2026
$4.3M
Triple Quadrupole/Linear Ion Trap LC-MS/MS for LPIS10RR027878 · NCRR · OREGON STATE UNIVERSITY · PI STEVENS, JAN FREDERIK · 2010 to 2010
$484k
NCRR NIH HHS S10 RR027878NIA NIH HHS T32 AG055378
6 · The paper itself

Abstract

In this study, an untargeted metabolomics approach was used to assess the effects of proton irradiation (1 Gy of 150 MeV) on the metabolome and DNA methylation pattern in the murine hippocampus and left ventricle of the heart 22 weeks following exposure using an integrated metabolomics-DNA methylation analysis. The integrated metabolomics-DNA methylation analysis in both tissues revealed significant alterations in aminoacyl-tRNA biosynthesis, but the direction of change was tissue-dependent. Individual and total amino acid synthesis were downregulated in the left ventricle of proton-irradiated mice but were upregulated in the hippocampus of proton-irradiated mice. Amino acid tRNA synthetase methylation was mostly downregulated in the hippocampus of proton-irradiated mice, whereas no consistent methylation pattern was observed for amino acid tRNA synthetases in the left ventricle of proton-irradiated mice. Thus, proton irradiation causes long-term changes in the left ventricle and hippocampus in part through methylation-based epigenetic modifications. Integrated analysis of metabolomics and DNA methylation is a powerful approach to obtain converging evidence of pathways significantly affected. This in turn might identify biomarkers of the radiation response, help identify therapeutic targets, and assess the efficacy of mitigators directed at those targets to minimize, or even prevent detrimental long-term effects of proton irradiation on the heart and the brain.

Indexed as

hippocampusintegrated epigenetic metabolomics analysisleft ventricleParkinson's diseaseproton irradiationradiation biomarkers

Identifiers

PMID31552266
PMCPMC6746933
OpenAlexW2968506647

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.