Evidence map›Paper›PMID 31552061›Full record

ArticleFrontiers in plant science2019

Dynamic Changes in Genome-Wide Histone3 Lysine27 Trimethylation and Gene Expression of Soybean Roots in Response to Salt Stress.

Lei Sun, Guangshu Song, Weijun Guo, Weixuan Wang, Hongkun Zhao, Tingting Gao, Qingxue Lv, Xue Yang, Fan Xu, Yingshan Dong and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Article
  3. Epigenomics and Non-Coding RNAs in Soybean Adaptation to Abiotic Stresses.International journal of molecular sciences · 2025
    Review
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  19. International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Lei SunCollege of Agriculture, Northeast Agricultural University, Harbin, China.
Guangshu SongMaize Research Institute, Jilin Academy of Agricultural Sciences, Gongzhuling, China.
Weijun GuoBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China.
Weixuan WangBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China.
Hongkun ZhaoSoybean Research Institute, Jilin Academy of Agricultural Sciences, Changchun, China.
Tingting GaoMaize Research Institute, Jilin Academy of Agricultural Sciences, Gongzhuling, China.
Qingxue LvMaize Research Institute, Jilin Academy of Agricultural Sciences, Gongzhuling, China.
Xue YangMaize Research Institute, Jilin Academy of Agricultural Sciences, Gongzhuling, China.
Fan XuBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China.
Yingshan DongCollege of Agriculture, Northeast Agricultural University, Harbin, China.
Li PuBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing, China.
Jilin Academy of Agricultural Sciences · CNBiotechnology Research Institute · CNChinese Academy of Agricultural Sciences · CNNortheast Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Soybean is an important economic crop for human diet, animal feeds and biodiesel due to high protein and oil content. Its productivity is significantly hampered by salt stress, which impairs plant growth and development by affecting gene expression, in part, through epigenetic modification of chromatin status. However, little is known about epigenetic regulation of stress response in soybean roots. Here, we used RNA-seq and ChIP-seq technologies to study the dynamics of genome-wide transcription and histone methylation patterns in soybean roots under salt stress. Eight thousand seven hundred ninety eight soybean genes changed their expression under salt stress treatment. Whole-genome ChIP-seq study of an epigenetic repressive mark, histone H3 lysine 27 trimethylation (H3K27me3), revealed the changes in H3K27me3 deposition during the response to salt stress. Unexpectedly, we found that most of the inactivation of genes under salt stress is strongly correlated with the

Indexed as

ChIP-seqhistone methylationhistone modifiersRNA-seqsalt stresssoybean

Identifiers

PMID31552061
PMCPMC6746917
OpenAlexW2964338031

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.