Evidence map›Paper›PMID 31550608›Full record

ArticleVirology2019

Genomic characterization of human adenovirus type 4 strains isolated worldwide since 1953 identifies two separable phylogroups evolving at different rates from their most recent common ancestor.

Gabriel Gonzalez, Camden R Bair, Daryl M Lamson, Hidemi Watanabe, Laura Panto, Michael J Carr, Adriana E Kajon

Abstract read
In one paragraph

Article in Virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Gabriel GonzalezResearch Center for Zoonosis Control, Hokkaido University, Sapporo, Japan. Electronic address: gagonzalez@czc.hokudai.ac.jp.
Camden R BairInfectious Disease Program, Lovelace Respiratory Research Institute, New Mexico, USA.
Daryl M LamsonWadsworth Center, New York State Department of Health, New York, USA.
Hidemi WatanabeGraduate School of Information Science and Technology, Hokkaido University, Japan.
Laura PantoGraduate School of Information Science and Technology, Hokkaido University, Japan.
Michael J CarrGlobal Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, Japan; National Virus Reference Laboratory, School of Medicine, University College Dublin, Ireland.
Adriana E KajonInfectious Disease Program, Lovelace Respiratory Research Institute, New Mexico, USA. Electronic address: akajon@lrri.org.

Funding

Biology of Infectious Diseases &InflammationT32AI007538 · NIAID · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Michelle A Ozbun · 1998 to 2026
$5.2M
NIAID NIH HHS T32 AI007538
6 · The paper itself

Abstract

Species Human mastadenovirus E (HAdV-E) comprises several simian types and a single human type: HAdV-E4, a respiratory and ocular pathogen. RFLP analysis for the characterization of intratypic genetic variability has previously distinguished two HAdV-E4 clusters: prototype (p)-like and a-like. Our analysis of whole genome sequences confirmed two distinct lineages, which we refer to as phylogroups (PGs). PGs I and II comprise the p- and a-like genomes, respectively, and differ significantly in their G + C content (57.7% ± 0.013 vs 56.3% ± 0.015). Sequence differences distinguishing the two clades map to several regions of the genome including E3 and ITR. Bayesian analyses showed that the two phylogroups diverged approximately 602 years before the present. A relatively faster evolutionary rate was identified for PG II. Our data provide a rationale for the incorporation of phylogroup identity to HAdV-E4 strain designation to reflect the identified unique genetic characteristics that distinguish PGs I and II.

Indexed as

Genome, ViralPhylogenyAdenoviruses, HumanAdenovirus Infections, HumanBase CompositionBase SequenceEvolution, MolecularGenomicsHumansRecombination, GeneticViral ProteinsViral ProteinsAdenovirus type 4EvolutionGenetic diversityHuman mastadenovirus E

Identifiers

PMID31550608
PMCPMC7448680

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.