Evidence map›Paper›PMID 31549173›Full record

SynthesisInternational journal of epidemiology2019

Appraising the causal relevance of DNA methylation for risk of lung cancer.

Thomas Battram, Rebecca C Richmond, Laura Baglietto, Philip C Haycock, Vittorio Perduca, Stig E Bojesen, Tom R Gaunt, Gibran Hemani, Florence Guida, Robert Carreras-Torres and 17 more

Open access · hybridAbstract readMeta-Analysis
In one paragraph

Synthesis in International journal of epidemiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 7 pooled it
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 7 syntheses or guidelines pooled it, 78 citations in OpenAlex.

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  16. Smoking, blood DNA methylation sites and lung cancer risk.Environmental pollution (Barking, Essex : 1987) · 2023
    Article
  17. Blood LeukocyteCancer research communications · 2023
    Article
  18. Article
  19. Article
  20. The Association of Methylation Level in thePharmacogenomics and personalized medicine · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 13 institutions in 10 countries.

Thomas BattramMRC Integrative Epidemiology Unit.
Rebecca C RichmondMRC Integrative Epidemiology Unit.
Laura BagliettoDepartment of Clinical and Experimental Medicine, University of Pisa, Pisa, Italy.
Philip C HaycockMRC Integrative Epidemiology Unit.
Vittorio PerducaLaboratoire de Mathématiques Appliquées, Université Paris Descartes, Paris, France.
Stig E BojesenDepartment of Clinical Biochemistry, Herlev and Gentofte Hospital, Copenhagen University Hospital, Herlev, Denmark.
Tom R GauntMRC Integrative Epidemiology Unit.
Gibran HemaniMRC Integrative Epidemiology Unit.
Florence GuidaGenetic Epidemiology Division, International Agency for Research on Cancer, Lyon, France.
Robert Carreras-TorresGenetic Epidemiology Division, International Agency for Research on Cancer, Lyon, France.
Rayjean HungLunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, ON, Canada.
Christopher I AmosBiomedical Data Science, Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Joshua R FreemanDepartment of Biostatistics and Epidemiology, University of Massachusetts, Amherst, MA, USA.
Torkjel M SandangerDepartment of Community Medicine,Arctic University of Norway, Tromso, Norway.
Therese H NøstDepartment of Community Medicine,Arctic University of Norway, Tromso, Norway.
Børge G NordestgaardDepartment of Clinical Biochemistry, Herlev and Gentofte Hospital, Copenhagen University Hospital, Herlev, Denmark.
Andrew E TeschendorffDepartment of Women's Cancer, Institute for Women's Health, University College London, London, UK.
Silvia PolidoroMolecular and Genetic Epidemiology Unit, Italian Institute for Genomic Medicine (IIGM), Turin, Italy.
Paolo VineisMolecular and Genetic Epidemiology Unit, Italian Institute for Genomic Medicine (IIGM), Turin, Italy.
Gianluca SeveriCESP (Inserm U1018), Facultés de Médicine Université Paris-Sud, UVSQ, Université Paris-Saclay, Gustave Roussy, 94805, Villejuif, France.
Allison M HodgeCancer Epidemiology & Intelligence Division, Cancer Council Victoria, Melbourne, VIC, Australia.
Graham G GilesCancer Epidemiology & Intelligence Division, Cancer Council Victoria, Melbourne, VIC, Australia.
Kjell GrankvistDepartment of Medical Biosciences, Clinical Chemistry.
Mikael B JohanssonDepartment of Radiation Sciences, Umeå University, Umeå, Sweden.
Mattias JohanssonGenetic Epidemiology Division, International Agency for Research on Cancer, Lyon, France.
George Davey SmithMRC Integrative Epidemiology Unit.
Caroline L ReltonMRC Integrative Epidemiology Unit.
University of Bristol · GBCentre international de recherche sur le cancer · FRItalian institute for Genomic Medicine · ITThe University of Melbourne · AUUiT The Arctic University of Norway · NOUniversity of Copenhagen · DKChinese Academy of Sciences · CNDartmouth College · USDélégation Paris 5 · FRLunenfeld-Tanenbaum Research Institute · CAUniversité Paris-Sud · FRUniversity of Massachusetts Amherst · USUniversity of Pisa · IT

Funding

Translating Molecular and Clinical Data to Population Lung Cancer Risk AssessmentU19CA203654 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Christopher I. Amos · 2017 to 2026
$23.7M
Transdisciplinary Research in Cancer of the Lung (TRICL)U19CA148127 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AMOS, CHRISTOPHER I., LE MARCHAND, LOIC · 2010 to 2014
$10.9M
Biotechnology and Biological Sciences Research Council BB/I025263/1Biotechnology and Biological Sciences Research Council BB/I025751/1Cancer Research UK 19169Cancer Research UK 20138Cancer Research UK 22171Cancer Research UK C18281/A19169Cancer Research UK C52724/A20138Cancer Research UK C57854/A22171Medical Research Council G9815508Medical Research Council MC_PC_15018Medical Research Council MC_PC_19009Medical Research Council MC_UU_00011/1Medical Research Council MC_UU_00011/4Medical Research Council MC_UU_00011/5Medical Research Council MC_UU_12013/1Medical Research Council MC_UU_12013/2NCI NIH HHS U19 CA148127NCI NIH HHS U19 CA203654Wellcome Trust 102215/2/13/2Wellcome Trust 203746Wellcome Trust 208806/Z/17/ZWorld Health Organization 001
6 · The paper itself

Abstract

backgroundDNA methylation changes in peripheral blood have recently been identified in relation to lung cancer risk. Some of these changes have been suggested to mediate part of the effect of smoking on lung cancer. However, limitations with conventional mediation analyses mean that the causal nature of these methylation changes has yet to be fully elucidated.

methodsWe first performed a meta-analysis of four epigenome-wide association studies (EWAS) of lung cancer (918 cases, 918 controls). Next, we conducted a two-sample Mendelian randomization analysis, using genetic instruments for methylation at CpG sites identified in the EWAS meta-analysis, and 29 863 cases and 55 586 controls from the TRICL-ILCCO lung cancer consortium, to appraise the possible causal role of methylation at these sites on lung cancer.

resultsSixteen CpG sites were identified from the EWAS meta-analysis [false discovery rate (FDR) < 0.05], for 14 of which we could identify genetic instruments. Mendelian randomization provided little evidence that DNA methylation in peripheral blood at the 14 CpG sites plays a causal role in lung cancer development (FDR > 0.05), including for cg05575921-AHRR where methylation is strongly associated with both smoke exposure and lung cancer risk.

conclusionsThe results contrast with previous observational and mediation analysis, which have made strong claims regarding the causal role of DNA methylation. Thus, previous suggestions of a mediating role of methylation at sites identified in peripheral blood, such as cg05575921-AHRR, could be unfounded. However, this study does not preclude the possibility that differential DNA methylation at other sites is causally involved in lung cancer development, especially within lung tissue.

Indexed as

Basic Helix-Loop-Helix ProteinsCpG IslandsDNA MethylationFemaleGenome-Wide Association StudyHumansLung NeoplasmsMaleMendelian Randomization AnalysisRepressor ProteinsAHRR protein, humanBasic Helix-Loop-Helix ProteinsRepressor ProteinsALSPACARIESDNA methylationLung cancerMendelian randomization

Identifiers

PMID31549173
PMCPMC6857764
OpenAlexW2976082919

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.