Evidence map›Paper›PMID 31548859›Full record

ArticleEvolutionary applications2019

The functional convergence of antibiotic resistance in β-lactamases is not conferred by a simple convergent substitution of amino acid.

Vivek Keshri, Kevin Arbuckle, Olivier Chabrol, Jean-Marc Rolain, Didier Raoult, Pierre Pontarotti

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In one paragraph

Article in Evolutionary applications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Vivek KeshriAix-Marseille Université, IRD, APHM, Microbe, Evolution, PHylogenie, Infection, IHU -Méditerranée Infection Marseille France.
Kevin ArbuckleDepartment of Evolution, Ecology and Behaviour University of Liverpool Liverpool UK.
Olivier ChabrolAix-Marseille Université, I2M, UMR-CNRS 7373, Evolution Biologique et Modélisation Marseille France.
Jean-Marc RolainAix-Marseille Université, IRD, APHM, Microbe, Evolution, PHylogenie, Infection, IHU -Méditerranée Infection Marseille France.
Didier RaoultAix-Marseille Université, IRD, APHM, Microbe, Evolution, PHylogenie, Infection, IHU -Méditerranée Infection Marseille France.
Pierre PontarottiAix-Marseille Université, IRD, APHM, Microbe, Evolution, PHylogenie, Infection, IHU -Méditerranée Infection Marseille France.ORCID https://orcid.org/0000-0001-7202-3648
Aix-Marseille Université · FRCentre National de la Recherche Scientifique · FRUniversity of Liverpool · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial resistance to antibiotics is a serious medical and public health concern worldwide. Such resistance is conferred by a variety of mechanisms, but the extensive variability in levels of resistance across bacteria is a common finding. Understanding the underlying evolutionary processes governing this functional variation in antibiotic resistance is important as it may allow the development of appropriate strategies to improve treatment options for bacterial infections. The main objective of this study was to examine the functional evolution of β-lactamases, a common mechanism of enzymatic resistance that inactivates a widely used class of antibiotics. We first obtained β-lactamase protein sequences and minimal inhibitory concentration (MIC), a measure of antibiotic function, from previously published literature. We then used a molecular phylogenetic framework to examine the evolution of β-lactamase functional activity. We found that the functional activity of antibiotic resistance mediated by β-lactamase has evolved in a convergent manner within molecular classes, but is not associated with any single amino acid substitution. This suggests that the dynamics of convergent evolution in this system can vary between the functional and molecular (sequence) levels. Such disassociation may hamper bioinformatic approaches to antibiotic resistance determination and underscore the need for (less efficient but more effective) activity assays as an essential step in evaluating resistance in a given case.

Indexed as

antibiotic resistanceconvergent evolutionβ‐lactam antibioticsβ‐lactamase

Identifiers

PMID31548859
PMCPMC6752183
OpenAlexW2950990274

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.