Evidence map›Paper›PMID 31548729›Full record

ArticleNature biotechnology2019

Targeted transcriptional modulation with type I CRISPR-Cas systems in human cells.

Adrian Pickar-Oliver, Joshua B Black, Mae M Lewis, Kevin J Mutchnick, Tyler S Klann, Kylie A Gilcrest, Madeleine J Sitton, Christopher E Nelson, Alejandro Barrera, Luke C Bartelt and 4 more

Abstract read
In one paragraph

Article in Nature biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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  5. Article
  6. Article
  7. Review
  8. Single-molecule live-cell RNA imaging with CRISPR-Csm.bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Optimization of CRISPR-Cas system for clinical cancer therapy.Bioengineering & translational medicine · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Adrian Pickar-OliverDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Joshua B BlackDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Mae M LewisDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Kevin J MutchnickDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Tyler S KlannDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Kylie A GilcrestDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.ORCID http://orcid.org/0000-0002-4053-1979
Madeleine J SittonDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Christopher E NelsonDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Alejandro BarreraDepartment of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC, USA.
Luke C BarteltCenter for Advanced Genomic Technologies, Duke University, Durham, NC, USA.
Timothy E ReddyCenter for Advanced Genomic Technologies, Duke University, Durham, NC, USA.ORCID http://orcid.org/0000-0002-7629-061X
Chase L BeiselDepartment of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, USA.ORCID http://orcid.org/0000-0003-0650-9943
Rodolphe BarrangouDepartment of Food, Bioprocessing and Nutrition Sciences, North Carolina State University, Raleigh, NC, USA.
Charles A GersbachDepartment of Biomedical Engineering, Duke University, Durham, NC, USA. charles.gersbach@duke.edu.ORCID http://orcid.org/0000-0003-1478-4013

Funding

University Training Program in Biomolecular & Tissue EngineeringT32GM008555 · NIGMS · DUKE UNIVERSITY · PI GERSBACH, CHARLES A. · 1994 to 2021
$8.1M
University Training Program in Biomolecular and Tissue EngineeringT32GM144291 · NIGMS · DUKE UNIVERSITY · PI Charles A. Gersbach, Tatiana Segura · 2022 to 2026
$2.6M
Engineering Targeted Epigenetic Modifiers for Precise Control of Gene RegulationR01DA036865 · NIDA · DUKE UNIVERSITY · PI CRAWFORD, GREGORY E, GERSBACH, CHARLES A. · 2013 to 2017
$2.6M
Engineering Morphogenetic Factors for Enhanced Genetic ReprogrammingDP2OD008586 · OD · DUKE UNIVERSITY · PI GERSBACH, CHARLES A. · 2011 to 2011
$2.4M
Understanding and exploiting the functional diversity of CRISPR-Cas immune systemsR35GM119561 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI BEISEL, CHASE LAWRENCE · 2016 to 2020
$1.9M
Enhancing Neuronal Reprogramming with Epigenome EditingF31NS105419 · NINDS · DUKE UNIVERSITY · PI BLACK, JOSHUA · 2017 to 2019
$59k
NIDA NIH HHS R01 DA036865NIGMS NIH HHS R35 GM119561NIGMS NIH HHS T32 GM008555NIGMS NIH HHS T32 GM144291NIH HHS DP2 OD008586NINDS NIH HHS F31 NS105419
6 · The paper itself

Abstract

Class 2 CRISPR-Cas systems, such as Cas9 and Cas12, have been widely used to target DNA sequences in eukaryotic genomes. However, class 1 CRISPR-Cas systems, which represent about 90% of all CRISPR systems in nature, remain largely unexplored for genome engineering applications. Here, we show that class 1 CRISPR-Cas systems can be expressed in mammalian cells and used for DNA targeting and transcriptional control. We repurpose type I variants of class 1 CRISPR-Cas systems from Escherichia coli and Listeria monocytogenes, which target DNA via a multi-component RNA-guided complex termed Cascade. We validate Cascade expression, complex formation and nuclear localization in human cells, and demonstrate programmable CRISPR RNA (crRNA)-mediated targeting of specific loci in the human genome. By tethering activation and repression domains to Cascade, we modulate the expression of targeted endogenous genes in human cells. This study demonstrates the use of Cascade as a CRISPR-based technology for targeted eukaryotic gene regulation, highlighting class 1 CRISPR-Cas systems for further exploration.

Indexed as

CRISPR-Cas SystemsEscherichia coliGenetic EngineeringHEK293 CellsHumansListeria monocytogenesRNA, Guide, CRISPR-Cas SystemsTranscription, GeneticRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID31548729
PMCPMC6893126

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.