Evidence map›Paper›PMID 31548728›Full record

ArticleNature biotechnology2019

In vivo CRISPR screening in CD8 T cells with AAV-Sleeping Beauty hybrid vectors identifies membrane targets for improving immunotherapy for glioblastoma.

Lupeng Ye, Jonathan J Park, Matthew B Dong, Quanjun Yang, Ryan D Chow, Lei Peng, Yaying Du, Jianjian Guo, Xiaoyun Dai, Guangchuan Wang and 2 more

Abstract read
In one paragraph

Article in Nature biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 203 citations in OpenAlex.

  1. Article
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  16. A STUB1-CHIC2 complex inhibits CD8Nature immunology · 2025
    Article
  17. AAV for ovarian cancer gene therapy.Cancer gene therapy · 2025
    Review
  18. Article
  19. Article
  20. Article

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Lupeng Ye *System Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA.
Jonathan J Park *System Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA.ORCID http://orcid.org/0000-0001-5887-3953
Matthew B Dong *System Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA.
Quanjun YangSystem Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA.
Ryan D ChowSystem Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA.ORCID http://orcid.org/0000-0002-1872-6307
Lei PengSystem Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA.
Yaying DuSystem Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA.ORCID http://orcid.org/0000-0002-3213-5722
Jianjian GuoSystem Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA.
Xiaoyun DaiSystem Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA.
Guangchuan WangSystem Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA.ORCID http://orcid.org/0000-0001-5315-1599
Youssef ErramiSystem Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA.
Sidi ChenSystem Biology Institute, Integrated Science & Technology Center, West Haven, CT, USA. sidi.chen@yale.edu.ORCID http://orcid.org/0000-0002-3819-5005
Yale Cancer Center · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Systems analysis of phenotypic switch in control of cancer invasionU54CA209992 · NCI · YALE UNIVERSITY · PI LEVCHENKO, ANDRE · 2016 to 2021
$10.1M
(PQ4) Novel tools for in vivo study of genetic interactions in cancer progressionR01CA231112 · NCI · YALE UNIVERSITY · PI CHEN, SIDI · 2018 to 2022
$3.0M
High-throughput in vivo genetics for immunotherapy target discoveryDP2CA238295 · NCI · YALE UNIVERSITY · PI CHEN, SIDI · 2018 to 2018
$2.5M
New approaches for single cell tagging, editing and profiling of glial cells in vivoRF1DA048811 · NIDA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HONG, WEIZHE · 2019 to 2019
$2.4M
Rapidly scalable platforms for direct in vivo screening of functional drivers in lethal cancersR33CA225498 · NCI · YALE UNIVERSITY · PI CHEN, SIDI · 2019 to 2021
$1.2M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysiS10OD018521 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2015 to 2015
$890k
NCI NIH HHS DP2 CA238295NCI NIH HHS R01 CA231112NCI NIH HHS R33 CA225498NCI NIH HHS U54 CA209992NIDA NIH HHS RF1 DA048811NIGMS NIH HHS T32 GM007205NIH HHS S10 OD018521
6 · The paper itself

Abstract

Targeting membrane proteins could improve the efficacy of T cell-based immunotherapies. To facilitate the identification of T cell targets, we developed a hybrid genetic screening system where the Sleeping Beauty (SB) transposon and single guide RNA cassette are nested in an adeno-associated virus (AAV). SB-mediated genomic integration of the single guide RNA cassette enables efficient gene editing in primary murine T cells as well as a screen readout. We performed in vivo AAV-SB-CRISPR screens for membrane protein targets in CD8

Indexed as

AnimalsAntigens, CDCD8-Positive T-LymphocytesCell Line, TumorCRISPR-Cas SystemsDependovirusFemaleGene EditingGlioblastomaHumansImmunotherapy, AdoptiveLymphocyte Activation Gene 3 ProteinMaleMembrane ProteinsMiceN-AcetylglucosaminyltransferasesAntigens, CDepithelial membrane protein-1Lymphocyte Activation Gene 3 ProteinMembrane ProteinsMgat5 protein, humanN-AcetylglucosaminyltransferasesNeoplasm ProteinsPDIA3 protein, humanProtein Disulfide-IsomerasesReceptors, Cell SurfaceRNA, Guide, CRISPR-Cas Systemssleeping beauty transposase, humanTransposases

Identifiers

PMID31548728
PMCPMC6834896
OpenAlexW2974009848

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.