Evidence map›Paper›PMID 31548691›Full record

ArticleNature chemical biology2019

The morphogen Sonic hedgehog inhibits its receptor Patched by a pincer grasp mechanism.

Amalie F Rudolf, Maia Kinnebrew, Christiane Kowatsch, T Bertie Ansell, Kamel El Omari, Benjamin Bishop, Els Pardon, Rebekka A Schwab, Tomas Malinauskas, Mingxing Qian and 7 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 75 citations in OpenAlex.

  1. Review
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  9. Diffusion barriers imposed by tissue topology shape Hedgehog morphogen gradients.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  11. Review
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  15. Review
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  18. Article
  19. Hedgehog signaling mechanism and role in cancer.Seminars in cancer biology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 3 countries.

Amalie F RudolfDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Maia KinnebrewDepartments of Biochemistry and Medicine, Stanford University School of Medicine, Stanford, CA, USA.
Christiane KowatschDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
T Bertie AnsellDepartment of Biochemistry, University of Oxford, Oxford, UK.
Kamel El OmariScience Division, Diamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.
Benjamin BishopDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Els PardonStructural Biology Brussels, Vrije Universiteit Brussel (VUB), Brussels, Belgium.
Rebekka A SchwabDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Tomas MalinauskasDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.
Mingxing QianDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, MO, USA.
Ramona DumanScience Division, Diamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.
Douglas F CoveyDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, MO, USA.
Jan SteyaertStructural Biology Brussels, Vrije Universiteit Brussel (VUB), Brussels, Belgium.
Armin WagnerScience Division, Diamond Light Source, Harwell Science and Innovation Campus, Didcot, UK.
Mark S P SansomDepartment of Biochemistry, University of Oxford, Oxford, UK.
Rajat RohatgiDepartments of Biochemistry and Medicine, Stanford University School of Medicine, Stanford, CA, USA. rrohatgi@stanford.edu.
Christian SieboldDivision of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK. christian@strubi.ox.ac.uk.ORCID http://orcid.org/0000-0002-6635-3621
Centre for Human Genetics · GBDiamond Light Source · GBUniversity of Oxford · GBVrije Universiteit Brussel · BEWashington University in St. Louis · USStanford Medicine · USStanford University · US

Funding

Supplement application for an Olympus automated microscopeR35GM118082 · NIGMS · STANFORD UNIVERSITY · PI RAJAT ROHATGI · 2016 to 2026
$7.6M
Post-lysosomal cholesterol trafficking networksR01HL067773 · NHLBI · WASHINGTON UNIVERSITY · PI SCHAFFER, JEAN E. · 2002 to 2021
$6.3M
Signal Transduction by OxysterolsR01GM106078 · NIGMS · STANFORD UNIVERSITY · PI COVEY, DOUGLAS F, ROHATGI, RAJAT · 2014 to 2017
$1.6M
Biotechnology and Biological Sciences Research Council BB/R00126X/1Cancer Research UK 14414Cancer Research UK 26752Cancer Research UK A14414Cancer Research UK A16135Cancer Research UK A26752European Research Council 647278NHLBI NIH HHS R01 HL067773NIGMS NIH HHS R01 GM106078NIGMS NIH HHS R35 GM118082Wellcome Trust 208361
6 · The paper itself

Abstract

Hedgehog (HH) ligands, classical morphogens that pattern embryonic tissues in all animals, are covalently coupled to two lipids-a palmitoyl group at the N terminus and a cholesteroyl group at the C terminus. While the palmitoyl group binds and inactivates Patched 1 (PTCH1), the main receptor for HH ligands, the function of the cholesterol modification has remained mysterious. Using structural and biochemical studies, along with reassessment of previous cryo-electron microscopy structures, we find that the C-terminal cholesterol attached to Sonic hedgehog (Shh) binds the first extracellular domain of PTCH1 and promotes its inactivation, thus triggering HH signaling. Molecular dynamics simulations show that this interaction leads to the closure of a tunnel through PTCH1 that serves as the putative conduit for sterol transport. Thus, Shh inactivates PTCH1 by grasping its extracellular domain with two lipidic pincers, the N-terminal palmitate and the C-terminal cholesterol, which are both inserted into the PTCH1 protein core.

Indexed as

AnimalsCholesterolGene Expression RegulationHedgehog ProteinsHEK293 CellsHumansMiceModels, MolecularNIH 3T3 CellsPatched-1 ReceptorProtein BindingProtein ConformationSingle-Domain AntibodiesCholesterolHedgehog ProteinsPatched-1 ReceptorPTCH1 protein, humanSHH protein, humanSingle-Domain Antibodies

Identifiers

PMID31548691
PMCPMC6764859
OpenAlexW2974282989

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.