Evidence map›Paper›PMID 31548647›Full record

ArticleNature ecology & evolution2019

Selection and gene flow shape niche-associated variation in pheromone response.

Daehan Lee, Stefan Zdraljevic, Daniel E Cook, Lise Frézal, Jung-Chen Hsu, Mark G Sterken, Joost A G Riksen, John Wang, Jan E Kammenga, Christian Braendle and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature ecology & evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. bioRxiv : the preprint server for biology · 2025
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  4. Review
  5. Genome Sequencing of the Antibiotic-ResistantInternational journal of molecular sciences · 2025
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  6. Article
  7. Review
  8. Review
  9. Review
  10. Glial expression of a steroidogenic enzyme underlies natural variation in hitchhiking behavior.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Natural genetic variation in the pheromone production ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Natural variation inGenome research · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Isolating Caenorhabditis elegans from the Natural Habitat.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 5 countries.

Daehan LeeDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.ORCID http://orcid.org/0000-0002-0546-8484
Stefan ZdraljevicDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.ORCID http://orcid.org/0000-0003-2883-4616
Daniel E CookDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA.ORCID http://orcid.org/0000-0003-3347-562X
Lise FrézalInstitut de Biologie de l'Ecole Normale Supérieure, CNRS, Inserm, École Normale Supérieure, Paris Sciences et Lettres, Paris, France.ORCID http://orcid.org/0000-0002-6518-0423
Jung-Chen HsuBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Mark G SterkenLaboratory of Nematology, Wageningen University and Research, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0001-7119-6213
Joost A G RiksenLaboratory of Nematology, Wageningen University and Research, Wageningen, The Netherlands.
John WangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.ORCID http://orcid.org/0000-0002-6179-775X
Jan E KammengaLaboratory of Nematology, Wageningen University and Research, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0003-4822-4436
Christian BraendleUniversité Côte d'Azur, CNRS, Inserm, IBV, Nice, France.ORCID http://orcid.org/0000-0003-0203-4581
Marie-Anne FélixInstitut de Biologie de l'Ecole Normale Supérieure, CNRS, Inserm, École Normale Supérieure, Paris Sciences et Lettres, Paris, France.
Frank C SchroederBoyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0002-4420-0237
Erik C AndersenDepartment of Molecular Biosciences, Northwestern University, Evanston, IL, USA. Erik.Andersen@Northwestern.edu.ORCID http://orcid.org/0000-0003-0229-9651
Northwestern University · USCentre National de la Recherche Scientifique · FRWageningen University & Research · NLBiodiversity Research Center, Academia Sinica · TWCornell University · US

Funding

CELLULAR &MOLECULAR BASIS OF DISEASE TRAINING PROGRAMT32GM008061 · NIGMS · NORTHWESTERN UNIVERSITY · PI CARTHEW, RICHARD W. · 1985 to 2022
$17.1M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Small molecule signaling in C. elegansR35GM131877 · NIGMS · BOYCE THOMPSON INST FOR PLANT RESEARCH · PI Frank Clemens Schroeder · 2019 to 2026
$5.0M
Large scale nutrigenetics and genomics in a tractable metazoan modelR01DK115690 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ANDERSEN, ERIK CHRISTIAN, SCHROEDER, FRANK CLEMENS · 2017 to 2020
$2.8M
NIDDK NIH HHS R01 DK115690NIGMS NIH HHS R35 GM131877NIGMS NIH HHS T32 GM008061NIH HHS P40 OD010440
6 · The paper itself

Abstract

From quorum sensing in bacteria to pheromone signalling in social insects, chemical communication mediates interactions among individuals in local populations. In Caenorhabditis elegans, ascaroside pheromones can dictate local population density; high levels of pheromones inhibit the reproductive maturation of individuals. Little is known about how natural genetic diversity affects the pheromone responses of individuals from diverse habitats. Here, we show that a niche-associated variation in pheromone receptor genes contributes to natural differences in pheromone responses. We identified putative loss-of-function deletions that impair duplicated pheromone receptor genes (srg-36 and srg-37), which were previously shown to be lost in population-dense laboratory cultures. A common natural deletion in srg-37 arose recently from a single ancestral population that spread throughout the world; this deletion underlies reduced pheromone sensitivity across the global C. elegans population. We found that many local populations harbour individuals with a wild-type or a deletion allele of srg-37, suggesting that balancing selection has maintained the recent variation in this pheromone receptor gene. The two srg-37 genotypes are associated with niche diversity underlying boom-and-bust population dynamics. We hypothesize that human activities likely contributed to the gene flow and balancing selection of srg-37 variation through facilitating the migration of species and providing a favourable niche for the recently arisen srg-37 deletion.

Indexed as

Caenorhabditis elegansGene FlowAnimalsPheromonesPheromones

Identifiers

PMID31548647
PMCPMC6764921
OpenAlexW2974164773

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.