Evidence map›Paper›PMID 31548566›Full record

ArticleScientific reports2019

Mutation profiling of cancer drivers in Brazilian colorectal cancer.

Wellington Dos Santos, Thais Sobanski, Ana Carolina de Carvalho, Adriane Feijó Evangelista, Marcus Matsushita, Gustavo Nóriz Berardinelli, Marco Antonio de Oliveira, Rui Manuel Reis, Denise Peixoto Guimarães

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 3 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 3 syntheses or guidelines pooled it, 52 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Article
  6. Article
  7. Observational
  8. Article
  9. Integrated molecular profiling ofJournal of gastrointestinal oncology · 2024
    Article
  10. Genomic ancestry and cancer among Latin Americans.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
    Review
  11. Article
  12. Distinct Driver Pathway Enrichments and a High Prevalence ofInternational journal of molecular sciences · 2024
    Article
  13. Association ofCurrent issues in molecular biology · 2024
    Article
  14. Article
  15. Review
  16. International journal of molecular sciences · 2023
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 3 countries.

Wellington Dos SantosMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.
Thais SobanskiMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.
Ana Carolina de CarvalhoMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.
Adriane Feijó EvangelistaMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.ORCID http://orcid.org/0000-0002-4731-2082
Marcus MatsushitaDepartment of Pathology, Barretos Cancer Hospital, Barretos, Brazil.
Gustavo Nóriz BerardinelliMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.
Marco Antonio de OliveiraMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil.
Rui Manuel ReisMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil. ruireis.hcb@gmail.com.ORCID http://orcid.org/0000-0002-9639-7940
Denise Peixoto GuimarãesMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, Brazil. guimaraes.dp@gmail.com.
Hospital de Câncer de Barretos · BRGovernment of Spain · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular basis of colorectal cancer (CRC) can guide patient prognosis and therapy. In Brazil, knowledge on the CRC mutation landscape is limited. Here, we investigated the mutation profile of 150 cancer-related genes by next-generation sequencing and associated with microsatellite instability (MSI) and genetic ancestry in a series of 91 Brazilian CRC patients. Driver mutations were found in the APC (71.4%), TP53 (56.0%), KRAS (52.7%), PIK3CA (15.4%) and FBXW7 (10.9%) genes. Overall, genes in the MAPK/ERK, PIK3/AKT, NOTCH and receptor tyrosine kinase signaling pathways were mutated in 68.0%, 23.1%, 16.5%, and 15.3% of patients, respectively. MSI was found in 13.3% of tumors, most of which were proximal (52.4%, P< 0.001) and had a high mutation burden. European genetic ancestry was predominant (median of 83.1%), followed by Native American (4.1%), Asian (3.4%) and African (3.2%). NF1 and BRAF mutations were associated with African ancestry, while TP53 and PIK3CA mutations were inversely correlated with Native American ancestry. Our study suggests that Brazilian CRC patients exhibit a mutation profile similar to other populations and identify the most frequently mutated genes, which could be useful in future target therapies and molecular cancer screening strategies.

Indexed as

Microsatellite InstabilityMutationAdenomatous Polyposis Coli ProteinAdultAgedAged, 80 and overBiomarkers, TumorBrazilClass I Phosphatidylinositol 3-KinasesColorectal NeoplasmsDNA Mutational AnalysisF-Box-WD Repeat-Containing Protein 7FemaleHigh-Throughput Nucleotide SequencingHumansMaleAdenomatous Polyposis Coli ProteinAPC protein, humanBiomarkers, TumorClass I Phosphatidylinositol 3-KinasesF-Box-WD Repeat-Containing Protein 7KRAS protein, humanPIK3CA protein, humanProto-Oncogene Proteins p21(ras)

Identifiers

PMID31548566
PMCPMC6757044
OpenAlexW2973868428

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.