Evidence map›Paper›PMID 31548428›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.

David M Needham, Susumu Yoshizawa, Toshiaki Hosaka, Camille Poirier, Chang Jae Choi, Elisabeth Hehenberger, Nicholas A T Irwin, Susanne Wilken, Cheuk-Man Yung, Charles Bachy and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 176 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. A dinoflagellate-infecting giant virus with a micron-length tail.bioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 10 institutions in 5 countries.

David M NeedhamMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039.
Susumu YoshizawaAtmosphere & Ocean Research Institute, University of Tokyo, Chiba 277-8564, Japan.ORCID 0000-0001-9667-6010
Toshiaki HosakaLaboratory for Protein Functional & Structural Biology, RIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0002-7652-8114
Camille PoirierMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039.
Chang Jae ChoiMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039.
Elisabeth HehenbergerMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039.ORCID 0000-0001-7810-1336
Nicholas A T IrwinDepartment of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.
Susanne WilkenMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039.
Cheuk-Man YungMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039.
Charles BachyMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039.
Rika KuriharaGraduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama 700-8530, Japan.
Yu NakajimaAtmosphere & Ocean Research Institute, University of Tokyo, Chiba 277-8564, Japan.
Keiichi KojimaGraduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama 700-8530, Japan.
Tomomi Kimura-SomeyaLaboratory for Protein Functional & Structural Biology, RIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0003-2232-1801
Guy LeonardLiving Systems Institute, School of Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4SB, United Kingdom.
Rex R MalmstromDepartment of Energy Joint Genome Institute, Walnut Creek, CA 94598.
Daniel R MendeDaniel K. Inouye Center for Microbial Oceanography, University of Hawaii, Manoa, Honolulu, HI 96822.
Daniel K OlsonDaniel K. Inouye Center for Microbial Oceanography, University of Hawaii, Manoa, Honolulu, HI 96822.
Yuki SudoGraduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama 700-8530, Japan.ORCID 0000-0001-8155-9356
Sebastian SudekMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039.
Thomas A RichardsLiving Systems Institute, School of Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4SB, United Kingdom.
Edward F DeLongDaniel K. Inouye Center for Microbial Oceanography, University of Hawaii, Manoa, Honolulu, HI 96822.ORCID 0000-0002-3088-4965
Patrick J KeelingDepartment of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.
Alyson E SantoroDepartment of Ecology, Evolution and Marine Biology, University of California, Santa Barbara, CA 93106.ORCID 0000-0003-2503-8219
Mikako ShirouzuLaboratory for Protein Functional & Structural Biology, RIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.
Wataru IwasakiAtmosphere & Ocean Research Institute, University of Tokyo, Chiba 277-8564, Japan; iwasaki@bs.s.u-tokyo.ac.jp azworden@geomar.de.ORCID 0000-0002-9169-9245
Alexandra Z WordenMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039; iwasaki@bs.s.u-tokyo.ac.jp azworden@geomar.de.ORCID 0000-0002-9888-9324
Monterey Bay Aquarium Research Institute · USOkayama University · JPRIKEN Center for Biosystems Dynamics Research · JPUniversity of Hawaiʻi at Mānoa · USThe University of Tokyo · JPUniversity of British Columbia · CAUniversity of Exeter · GBJoint Genome Institute · USTokyo University of Science · JPUniversity of California, Santa Barbara · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Giant viruses are remarkable for their large genomes, often rivaling those of small bacteria, and for having genes thought exclusive to cellular life. Most isolated to date infect nonmarine protists, leaving their strategies and prevalence in marine environments largely unknown. Using eukaryotic single-cell metagenomics in the Pacific, we discovered a

Indexed as

Biological EvolutionEcosystemEukaryotaGenome, ViralGiant VirusesMetagenomicsOceans and SeasPhycodnaviridaePhylogenyProtonsRhodopsinSeawaterViral ProteinsProtonsRhodopsinViral Proteinsgiant viruseshost–virus interactionsmarine carbon cyclesingle-cell genomicsviral evolution

Identifiers

PMID31548428
PMCPMC6789865
OpenAlexW2974984530

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.