Evidence map›Paper›PMID 31548331›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2019

Detection of Cell Surface Ligands for Human Synovial γδ T Cells.

Cheryl Collins, Yuan Lui, Ana Mafalda Santos, Bryan A Ballif, Anisha Mahalya Gogerly-Moragoda, Heather Brouwer, Robin Ross, Kuberan Balagurunathan, Sumana Sharma, Gavin J Wright and 2 more

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Immune Response toCurrent issues in molecular biology · 2021
    Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Cheryl CollinsVermont Center for Immunology and Infectious Diseases, Department of Medicine, Larner College of Medicine, The University of Vermont, Burlington, VT 05405.
Yuan LuiWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Headington, Oxford OX3 9DS, United Kingdom.
Ana Mafalda SantosWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Headington, Oxford OX3 9DS, United Kingdom.
Bryan A BallifDepartment of Biology, College of Arts and Sciences, The University of Vermont, Burlington, VT 05405.
Anisha Mahalya Gogerly-MoragodaVermont Center for Immunology and Infectious Diseases, Department of Medicine, Larner College of Medicine, The University of Vermont, Burlington, VT 05405.ORCID 0000-0001-6982-2078
Heather BrouwerWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Headington, Oxford OX3 9DS, United Kingdom.ORCID 0000-0003-3840-6834
Robin RossDepartment of Medicine, Brigham and Women's Hospital, Boston, MA 02115.
Kuberan BalagurunathanDepartment of Medicinal Chemistry, University of Utah, Salt Lake City, UT 84112; and.
Sumana SharmaWellcome Sanger Institute, Cambridge CB10 1SA, United Kingdom.ORCID 0000-0003-0598-2181
Gavin J WrightWellcome Sanger Institute, Cambridge CB10 1SA, United Kingdom.
Simon DavisWeatherall Institute of Molecular Medicine, John Radcliffe Hospital, Headington, Oxford OX3 9DS, United Kingdom.
Ralph C BuddVermont Center for Immunology and Infectious Diseases, Department of Medicine, Larner College of Medicine, The University of Vermont, Burlington, VT 05405; ralph.budd@med.uvm.edu.

Funding

Vermont INBRE Administrative Supplement 2024 AWD 118P20GM103449 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI CHRISTOPHER S FRANCKLYN · 2012 to 2026
$58.4M
Therapeutic assessment of synthetic heparin sulfates in transplantation modelsP01HL107152 · NHLBI · VIRGINIA COMMONWEALTH UNIVERSITY · PI DESAI, UMESH RAMANLAL · 2011 to 2017
$15.8M
Vermont Immunology/Infectious Diseases CenterP30GM118228 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C · 2016 to 2021
$6.8M
Structure and Ligand(s) for Human Synovial TCR-Gamma/DeltaR21AI107298 · NIAID · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C · 2016 to 2017
$436k
Metabolic Regulation of Caspases and Survival in T CellsR21AI119979 · NIAID · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C · 2016 to 2017
$426k
Ligands for Human Synovial Gamma/Delta T CellsR21AI151407 · NIAID · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C, DAVIS, SIMON JOHN · 2020 to 2021
$396k
NHLBI NIH HHS P01 HL107152NIAID NIH HHS R21 AI107298NIAID NIH HHS R21 AI119979NIAID NIH HHS R21 AI151407NIGMS NIH HHS P20 GM103449NIGMS NIH HHS P30 GM118228Wellcome TrustWellcome Trust 098274/Z/12/ZWellcome Trust 206194
6 · The paper itself

Abstract

Lack of understanding of the nature and physiological regulation of γδ T cell ligands has considerably hampered full understanding of the function of these cells. We developed an unbiased approach to identify human γδ T cells ligands by the production of a soluble TCR-γδ (sTCR-γδ) tetramer from a synovial Vδ1 γδ T cell clone from a Lyme arthritis patient. The sTCR-γδ was used in flow cytometry to initially define the spectrum of ligand expression by both human tumor cell lines and certain human primary cells. Analysis of diverse tumor cell lines revealed high ligand expression on several of epithelial or fibroblast origin, whereas those of hematopoietic origin were largely devoid of ligand. This allowed a bioinformatics-based identification of candidate ligands using RNAseq data from each tumor line. We further observed that whereas fresh monocytes and T cells expressed low to negligible levels of TCR-γδ ligands, activation of these cells resulted in upregulation of surface ligand expression. Ligand upregulation on monocytes was partly dependent upon IL-1β. The sTCR-γδ tetramer was then used to bind candidate ligands from lysates of activated monocytes and analyzed by mass spectrometry. Surface TCR-γδ ligand was eliminated by treatment with trypsin or removal of glycosaminoglycans, and also suppressed by inhibition of endoplasmic reticulum-Golgi transport. Of particular interest was that inhibition of glycolysis also blocked TCR-γδ ligand expression. These findings demonstrate the spectrum of ligand(s) expression for human synovial Vδ1 γδ T cells as well as the physiology that regulates their expression.

Indexed as

Cell LineGlycolysisHumansLigandsLymphocyte ActivationMonocytesProtein MultimerizationReceptors, Antigen, T-Cell, gamma-deltaSynovial MembraneT-Lymphocyte SubsetsLigandsReceptors, Antigen, T-Cell, gamma-delta

Identifiers

PMID31548331
PMCPMC6804759

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.