Evidence map›Paper›PMID 31547478›Full record

ArticleMicroorganisms2019

Microbiota Composition and Functional Profiling Throughout the Gastrointestinal Tract of Commercial Weaning Piglets.

Raphaële Gresse, Frédérique Chaucheyras Durand, Lysiane Dunière, Stéphanie Blanquet-Diot, Evelyne Forano

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 1 synthesis or guideline pooled it, 98 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Consequences ofMicroorganisms · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Supplementation with Potato Protein Concentrate andAnimals : an open access journal from MDPI · 2025
    Article
  20. Gut Microbiota of Ruminants and Monogastric Livestock: An Overview.Animals : an open access journal from MDPI · 2025
    Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Raphaële GresseUniversité Clermont Auvergne, UMR 454 MEDIS UCA-INRA, F-63000 Clermont-Ferrand, France. raphaele.gresse@inra.fr.
Frédérique Chaucheyras DurandLallemand SAS, 19 rue des Briquetiers, BP59, F-31702 Blagnac CEDEX, France. fchaucheyrasdurand@lallemand.com.
Lysiane DunièreLallemand SAS, 19 rue des Briquetiers, BP59, F-31702 Blagnac CEDEX, France. lduniere@lallemand.com.
Stéphanie Blanquet-DiotUniversité Clermont Auvergne, UMR 454 MEDIS UCA-INRA, F-63000 Clermont-Ferrand, France. stephanie.blanquet@uca.fr.
Evelyne ForanoUniversité Clermont Auvergne, UMR 454 MEDIS UCA-INRA, F-63000 Clermont-Ferrand, France. evelyne.forano@inra.fr.ORCID 0000-0002-7450-3466
Université Clermont Auvergne · FRLallemand (France) · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dietary, environmental, and social stresses induced by weaning transition in pig production are associated with alterations of gut microbiota, diarrhea, and enteric infections. With the boom of -omic technologies, numerous studies have investigated the dynamics of fecal bacterial communities of piglets throughout weaning but much less research has been focused on the composition and functional properties of microbial communities inhabiting other gastrointestinal segments. The objective of the present study was to bring additional information about the piglet bacterial and archaeal microbiota throughout the entire digestive tract, both at the structural level by using quantitative PCR and high-throughput sequencing, and on functionality by measurement of short-chain fatty acids and predictions using Tax4Fun tool. Our results highlighted strong structural and functional differences between microbial communities inhabiting the fore and the lower gut as well as a quantitatively important archaeal community in the hindgut. The presence of opportunistic pathogens was also noticed throughout the entire digestive tract and could trigger infection emergence. Understanding the role of the intestinal piglet microbiota at weaning could provide further information about the etiology of post-weaning infections and lead to the development of effective preventive solutions.

Indexed as

gastrointestinal tractmicrobiotapigletsweaning

Identifiers

PMID31547478
PMCPMC6780805
OpenAlexW2972754671

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.