Evidence map›Paper›PMID 31545341›Full record

ArticleBiostatistics (Oxford, England)2021

A fast divide-and-conquer sparse Cox regression.

Yan Wang, Chuan Hong, Nathan Palmer, Qian Di, Joel Schwartz, Isaac Kohane, Tianxi Cai

Abstract read
In one paragraph

Article in Biostatistics (Oxford, England), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  13. Online Updating of Survival Analysis.Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America · 2021
    Article
  14. Scalable Algorithms for Large Competing Risks Data.Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yan WangDepartment of Environmental Health, Harvard T. H. Chan School of Public Health, 401 Park Drive West, Boston, MA, 02215, USA.
Chuan HongDepartment of Biomedical Informatics, Harvard Medical School, 25 Shattuck Street, Boston, MA, 02115, USA.
Nathan PalmerDepartment of Biomedical Informatics, Harvard Medical School, 25 Shattuck Street, Boston, MA, 02115, USA.
Qian DiDepartment of Environmental Health, Harvard T. H. Chan School of Public Health, 401 Park Drive West, Boston, MA, 02215, USA.
Joel SchwartzDepartment of Environmental Health, Harvard T. H. Chan School of Public Health, 401 Park Drive West, Boston, MA, 02215, USA.
Isaac KohaneDepartment of Biomedical Informatics, Harvard Medical School, 25 Shattuck Street, Boston, MA, 02115, USA.
Tianxi CaiDepartment of Biostatistics, Harvard T. H. Chan School of Public Health, 655 Huntington Avenue, Boston, MA, 02115, USA.

Funding

Translational Research Support CoreP30ES000002 · NIEHS · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI SUSAN A KORRICK · 1985 to 2026
$44.6M
TrainingU54HG007963 · NHGRI · HARVARD MEDICAL SCHOOL · PI KOHANE, ISAAC S., MURPHY, SHAWN N · 2014 to 2018
$18.3M
Cardiovascular Health and Air Pollution: A National StudyR01ES024332 · NIEHS · HARVARD SCHOOL OF PUBLIC HEALTH · PI ZANOBETTI, ANTONELLA · 2015 to 2018
$2.5M
NHGRI NIH HHS U54 HG007963NIEHS NIH HHS P30 ES000002NIEHS NIH HHS R01 ES024332
6 · The paper itself

Abstract

We propose a computationally and statistically efficient divide-and-conquer (DAC) algorithm to fit sparse Cox regression to massive datasets where the sample size $n_0$ is exceedingly large and the covariate dimension $p$ is not small but $n_0\gg p$. The proposed algorithm achieves computational efficiency through a one-step linear approximation followed by a least square approximation to the partial likelihood (PL). These sequences of linearization enable us to maximize the PL with only a small subset and perform penalized estimation via a fast approximation to the PL. The algorithm is applicable for the analysis of both time-independent and time-dependent survival data. Simulations suggest that the proposed DAC algorithm substantially outperforms the full sample-based estimators and the existing DAC algorithm with respect to the computational speed, while it achieves similar statistical efficiency as the full sample-based estimators. The proposed algorithm was applied to extraordinarily large survival datasets for the prediction of heart failure-specific readmission within 30 days among Medicare heart failure patients.

Indexed as

AlgorithmsMedicareAgedComputer SimulationHumansLeast-Squares AnalysisProportional Hazards ModelsUnited StatesCox proportional hazards modelDistributed learningDivide-and-conquerLeast square approximationShrinkage estimationVariable selection

Identifiers

PMID31545341
PMCPMC8036003

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.