Evidence map›Paper›PMID 31544923›Full record

ArticleNucleic acids research2019

Single-molecule visualization of human BLM helicase as it acts upon double- and single-stranded DNA substrates.

Chaoyou Xue, James M Daley, Xiaoyu Xue, Justin Steinfeld, Youngho Kwon, Patrick Sung, Eric C Greene

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Article
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  5. Specific Monitoring the DNA Helicase Function via Anchor-Embedded DNA Probe.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
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  8. Review
  9. Article
  10. Article
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  12. The convergence of head-on DNA unwinding forks induces helicase oligomerization and activity transition.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Chaoyou XueDepartment of Biochemistry & Molecular Biophysics, Columbia University, New York, NY 10032, USA.
James M DaleyDepartment of Biochemistry and Structural Biology, University of Texas Health Science Center at San Antonio, TX 78229, USA.
Xiaoyu XueDepartment of Chemistry and Biochemistry, Texas State University, San Marcos, TX 78666, USA.
Justin SteinfeldDepartment of Biochemistry & Molecular Biophysics, Columbia University, New York, NY 10032, USA.
Youngho KwonDepartment of Biochemistry and Structural Biology, University of Texas Health Science Center at San Antonio, TX 78229, USA.
Patrick SungDepartment of Biochemistry and Structural Biology, University of Texas Health Science Center at San Antonio, TX 78229, USA.
Eric C GreeneDepartment of Biochemistry & Molecular Biophysics, Columbia University, New York, NY 10032, USA.
Columbia University · USThe University of Texas Health Science Center at San Antonio · USTexas State University · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WALTER J. CHAZIN · 2001 to 2026
$89.6M
TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Robin Jean Leach · 1991 to 2026
$59.1M
YEAST DNA REPAIR GENES AND PROTEINS OF THE RAD52 GROUPR01ES007061 · NIEHS · YALE UNIVERSITY · PI Patrick Sung · 1995 to 2026
$9.4M
Protein purification instrumentation in support of single molecule studies of genome integrityR35GM118026 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GREENE, ERIC C · 2016 to 2025
$5.7M
Helicase regulation during homologous recombinationR01CA236606 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Eric C Greene · 2019 to 2026
$2.6M
NCI NIH HHS P01 CA092584NCI NIH HHS P30 CA054174NCI NIH HHS R01 CA236606NIEHS NIH HHS R01 ES007061NIGMS NIH HHS R35 GM118026
6 · The paper itself

Abstract

Bloom helicase (BLM) and its orthologs are essential for the maintenance of genome integrity. BLM defects represent the underlying cause of Bloom Syndrome, a rare genetic disorder that is marked by strong cancer predisposition. BLM deficient cells accumulate extensive chromosomal aberrations stemming from dysfunctions in homologous recombination (HR). BLM participates in several HR stages and helps dismantle potentially harmful HR intermediates. However, much remains to be learned about the molecular mechanisms of these BLM-mediated regulatory effects. Here, we use DNA curtains to directly visualize the activity of BLM helicase on single molecules of DNA. Our data show that BLM is a robust helicase capable of rapidly (∼70-80 base pairs per second) unwinding extensive tracts (∼8-10 kilobases) of double-stranded DNA (dsDNA). Importantly, we find no evidence for BLM activity on single-stranded DNA (ssDNA) that is bound by replication protein A (RPA). Likewise, our results show that BLM can neither associate with nor translocate on ssDNA that is bound by the recombinase protein RAD51. Moreover, our data reveal that the presence of RAD51 also blocks BLM translocation on dsDNA substrates. We discuss our findings within the context of potential regulator roles for BLM helicase during DNA replication and repair.

Indexed as

Single Molecule ImagingBase PairingBloom SyndromeDNADNA RepairDNA ReplicationDNA, Single-StrandedHomologous RecombinationHumansModels, MolecularRad51 RecombinaseRecQ HelicasesReplication Protein ABloom syndrome proteinDNADNA, Single-StrandedRad51 RecombinaseRecQ HelicasesReplication Protein A

Identifiers

PMID31544923
PMCPMC6868385
OpenAlexW2975693618

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.