Evidence map›Paper›PMID 31544554›Full record

ArticleJournal of neurogenetics2019

Heritable natural variation of light/dark preference in an outbred zebrafish population.

Amelia Dahlén, Mahendra Wagle, Mahdi Zarei, Su Guo

Open access · greenAbstract read
In one paragraph

Article in Journal of neurogenetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Amelia DahlénDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.ORCID 0000-0002-5765-1002
Mahendra WagleDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.ORCID 0000-0003-1802-9330
Mahdi ZareiDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.ORCID 0000-0001-7987-1877
Su GuoDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA.ORCID 0000-0002-7342-0108
University of California, San Francisco · US

Funding

Mechanisms that drive the variation of aversive behaviorR01GM132500 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GUO, SU · 2019 to 2022
$2.5M
Developing tools for understanding neuromodulation of hypothalamic funcR01DA035680 · NIDA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GUO, SU · 2013 to 2017
$1.7M
NIDA NIH HHS R01 DA035680NIGMS NIH HHS R01 GM132500
6 · The paper itself

Abstract

Anxiety is a fear-like response to stimuli perceived to be threatening. Excessive or uncontrollable anxiety is a debilitating psychiatric disorder which affects many people throughout their lifetime. In unravelling the complex genetic and environmental regulations of anxiety-like phenotypes, models measuring the natural dark avoidance of larval zebrafish have shed light on the individual variation and heritability of this anxiety-related trait. Using the light/dark choice paradigm and selective breeding, this study aims to validate previous findings of the variable (VDA) and strong dark aversion (SDA) heritability in AB-WT larval zebrafish using the outbred zebrafish strain EK, which offers more genetic diversity to aid in future molecular mapping efforts. 190 larvae (6 days post fertilization [dpf] and 7 dpf) were tested across four trials and divided into variable (VDA), medium (MDA) and strong (SDA) dark aversion for further in-crosses. VDA and MDA larvae became more explorative with time, whereas SDA larvae rarely left the preferred light zone. The SDA and VDA in-crosses significantly increased the respective phenotypes in the second generation of larvae, whereas VDA × MDA inter-crosses did not. For the second-generation SDA cohort, dark aversion correlated with increased thigmotaxis, which reinforces SDA as an anxiety-like phenotype. Our finding that the dark aversion trait and SDA and VDA phenotypes are heritable in an outbred zebrafish population lays an important foundation for future studies of genetic underpinnings using whole-genome mapping methods. This conserved fear/anxiety-like response in a highly accessible model organism also allows for further pharmacological and behavioral studies to elucidate the etiology of anxiety and the search for novel therapeutics for anxiety disorders.

Indexed as

AnimalsAnxietyBehavior, AnimalChoice BehaviorLarvaMotor ActivityPhenotypeZebrafishbehavioral diversityinheritancenatural variationPopulation genetics

Identifiers

PMID31544554
PMCPMC6919307
OpenAlexW2975776078

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.