Evidence map›Paper›PMID 31543454›Full record

ArticleCurrent biology : CB2019

NODULE INCEPTION Recruits the Lateral Root Developmental Program for Symbiotic Nodule Organogenesis in Medicago truncatula.

Katharina Schiessl, Jodi L S Lilley, Tak Lee, Ioannis Tamvakis, Wouter Kohlen, Paul C Bailey, Aaron Thomas, Jakub Luptak, Karunakaran Ramakrishnan, Matthew D Carpenter and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Current biology : CB, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 134 papers.

0numbers the graph read from it
0cells of the map it votes in
134citing papers in PubMed
34.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

134 citing papers in PubMed, 287 citations in OpenAlex.

  1. Article
  2. Review
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  20. Review

74 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Katharina SchiesslSainsbury Laboratory, Cambridge University, Bateman Street, Cambridge CB2 1LR, UK; Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich NR4 7UH, UK.
Jodi L S LilleyDepartment of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich NR4 7UH, UK.
Tak LeeSainsbury Laboratory, Cambridge University, Bateman Street, Cambridge CB2 1LR, UK.
Ioannis TamvakisSainsbury Laboratory, Cambridge University, Bateman Street, Cambridge CB2 1LR, UK; Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich NR4 7UH, UK.
Wouter KohlenLaboratory for Molecular Biology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands.
Paul C BaileyEarlham Institute, Norwich Research Park, Colney Lane, Norwich NR4 7UH, UK.
Aaron ThomasDepartment of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich NR4 7UH, UK.
Jakub LuptakDepartment of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich NR4 7UH, UK.
Karunakaran RamakrishnanDepartment of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich NR4 7UH, UK.
Matthew D CarpenterDepartment of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich NR4 7UH, UK.
Kirankumar S MysoreNoble Research Institute, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA.
Jiangqi WenNoble Research Institute, 2510 Sam Noble Parkway, Ardmore, OK 73401, USA.
Sebastian AhnertSainsbury Laboratory, Cambridge University, Bateman Street, Cambridge CB2 1LR, UK.
Veronica A GrieneisenDepartment of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich NR4 7UH, UK.
Giles E D OldroydSainsbury Laboratory, Cambridge University, Bateman Street, Cambridge CB2 1LR, UK; Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Colney Lane, Norwich NR4 7UH, UK. Electronic address: gedo2@cam.ac.uk.
John Innes Centre · GBNorwich Research Park · GBNoble Research Institute · USSainsbury Laboratory · GBEarlham Institute · GBUniversity of Cambridge · GBWageningen University & Research · NL

Funding

Biotechnology and Biological Sciences Research Council BB/K003712/1EPA EP-C-15-010
6 · The paper itself

Abstract

To overcome nitrogen deficiencies in the soil, legumes enter symbioses with rhizobial bacteria that convert atmospheric nitrogen into ammonium. Rhizobia are accommodated as endosymbionts within lateral root organs called nodules that initiate from the inner layers of Medicago truncatula roots in response to rhizobial perception. In contrast, lateral roots emerge from predefined founder cells as an adaptive response to environmental stimuli, including water and nutrient availability. CYTOKININ RESPONSE 1 (CRE1)-mediated signaling in the pericycle and in the cortex is necessary and sufficient for nodulation, whereas cytokinin is antagonistic to lateral root development, with cre1 showing increased lateral root emergence and decreased nodulation. To better understand the relatedness between nodule and lateral root development, we undertook a comparative analysis of these two root developmental programs. Here, we demonstrate that despite differential induction, lateral roots and nodules share overlapping developmental programs, with mutants in LOB-DOMAIN PROTEIN 16 (LBD16) showing equivalent defects in nodule and lateral root initiation. The cytokinin-inducible transcription factor NODULE INCEPTION (NIN) allows induction of this program during nodulation through activation of LBD16 that promotes auxin biosynthesis via transcriptional induction of STYLISH (STY) and YUCCAs (YUC). We conclude that cytokinin facilitates local auxin accumulation through NIN promotion of LBD16, which activates a nodule developmental program overlapping with that induced during lateral root initiation.

Indexed as

SymbiosisMedicago truncatulaOrganogenesis, PlantPlant ProteinsPlant Root NodulationPlant RootsTranscription FactorsPlant ProteinsTranscription FactorsauxinCYTOKININ RESPONSE FACTORendosymbiosisLATERAL ORGAN BOUNDARIES DOMAINlateral root/nodule organogenesisMedicago truncatulanitrogenNODULE INCEPTIONrhizobiaYUCCA

Identifiers

PMID31543454
PMCPMC6839406
OpenAlexW2974311212

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.