Evidence map›Paper›PMID 31541573›Full record

ArticleThe Journal of infectious diseases2020

Predictive Value of Respiratory Viral Detection in the Upper Respiratory Tract for Infection of the Lower Respiratory Tract With Hematopoietic Stem Cell Transplantation.

Jim Boonyaratanakornkit, Meghana Vivek, Hu Xie, Steven A Pergam, Guang-Shing Cheng, Marco Mielcarek, Joshua A Hill, Keith R Jerome, Ajit P Limaye, Wendy Leisenring and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 3 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 3 syntheses or guidelines pooled it, 43 citations in OpenAlex.

  1. Guideline
  2. Guideline
  3. Guidelines for COVID-19 Management in Hematopoietic Cell Transplantation and Cellular Therapy Recipients.Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation · 2020
    Guideline
  4. Review
  5. Article
  6. Article
  7. Outcomes in Hematopoietic Cell Transplant and Chimeric Antigen Receptor T-Cell Therapy Recipients With Pre-Cellular Therapy SARS-CoV-2 Infection.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2024
    Article
  8. Impact of Respiratory Viral Infections in Transplant Recipients.Journal of the Pediatric Infectious Diseases Society · 2024
    Review
  9. Article
  10. Article
  11. Observational
  12. Article
  13. Correlation of initial upper respiratory tract viral burden with progression to lower tract disease in adult allogeneic hematopoietic cell transplant recipients.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2022
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Jim BoonyaratanakornkitFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Meghana VivekFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Hu XieFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Steven A PergamFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Guang-Shing ChengFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Marco MielcarekFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Joshua A HillFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Keith R JeromeFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Ajit P LimayeDepartment of Medicine, University of Washington, Seattle, Washington, USA.
Wendy LeisenringFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Michael J BoeckhFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Alpana WaghmareFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
University of Washington · USFred Hutch Cancer Center · USSeattle Children's Hospital · US

Funding

HOST DEFENSE TRAINING IN ALLERGY AND INFECTIOUS DISEASEST32AI007044 · NIAID · UNIVERSITY OF WASHINGTON · PI DAVID Neal FREDRICKS · 1985 to 2026
$14.6M
Training Program in Infectious Diseases in the Immunocompromised HostT32AI118690 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BOECKH, MICHAEL J · 2016 to 2025
$4.0M
Infections in Hematopoietic Cell Transplant RecipientsK24HL093294 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BOECKH, MICHAEL J · 2009 to 2019
$1.5M
Viral and Host Biomarkers of Human Rhinovirus Disease Severity in TransplantationK23AI114844 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI WAGHMARE, ALPANA AMALKANT · 2015 to 2019
$897k
NHLBI NIH HHS K24 HL093294NIAID NIH HHS K23 AI114844NIAID NIH HHS T32 AI007044NIAID NIH HHS T32 AI118690
6 · The paper itself

Abstract

backgroundHematopoietic cell transplant (HCT) recipients are frequently infected with respiratory viruses (RVs) in the upper respiratory tract (URT), but the concordance between URT and lower respiratory tract (LRT) RV detection is not well characterized.

methodsHematopoietic cell transplant candidates and recipients with respiratory symptoms and LRT and URT RV testing via multiplex PCR from 2009 to 2016 were included. Logistic regression models were used to analyze risk factors for LRT RV detection.

resultsTwo-hundred thirty-five HCT candidates or recipients had URT and LRT RV testing within 3 days. Among 115 subjects (49%) positive for a RV, 37% (42 of 115) had discordant sample pairs. Forty percent (17 of 42) of discordant pairs were positive in the LRT but negative in the URT. Discordance was common for adenovirus (100%), metapneumovirus (44%), rhinovirus (34%), and parainfluenza virus type 3 (28%); respiratory syncytial virus was highly concordant (92%). Likelihood of LRT detection was increased with URT detection (oods ratio [OR] = 73.7; 95% confidence interval [CI], 26.7-204) and in cytomegalovirus-positive recipients (OR = 3.70; 95% CI, 1.30-10.0).

conclusionsHigh rates of discordance were observed for certain RVs. Bronchoalveolar lavage sampling may provide useful diagnostic information to guide management in symptomatic HCT candidates and recipients.

Indexed as

AdenoviridaeAdenoviridae InfectionsAdolescentAdultChildChild, PreschoolFemaleHematopoietic Stem Cell TransplantationHumansInfantInfant, NewbornMaleMiddle AgedMultiplex Polymerase Chain ReactionPrognosisRespiratory Syncytial Virusesdiagnosticshematopoietic stem cell transplantationrespiratory viruses

Identifiers

PMID31541573
PMCPMC7107470
OpenAlexW2973671248

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.