Evidence map›Paper›PMID 31541428›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]2019

Development and evaluation of LAMP-coupled lateral flow device for the detection of MAP in livestock at point of care resource-limited areas.

Rudrama Devi Punati, Prudhvi Chand Mallepaddi, Revathi Poonati, Soumendra Nath Maity, Jagdip Singh Sohal, Kavi Kishor B Polavarapu, Rathnagiri Polavarapu

Abstract readEvaluation Study
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology], 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. The development and use of ActiphageMicrobial biotechnology · 2020
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rudrama Devi PunatiDepartment of Biotechnology, Acharya Nagarjuna University, Guntur, Andhra Pradesh, 522 510, India.
Prudhvi Chand MallepaddiDepartment of Biotechnology, Acharya Nagarjuna University, Guntur, Andhra Pradesh, 522 510, India.
Revathi PoonatiDepartment of Biotechnology, Acharya Nagarjuna University, Guntur, Andhra Pradesh, 522 510, India.
Soumendra Nath MaityDepartment of Veterinary Microbiology, Genomix Molecular Diagnostics Pvt. Ltd, 5-36/207, Prashanthnagar, Kukatpally, Hyderabad, Telangana, 500 072, India.
Jagdip Singh SohalAMITY Center for Mycobacterial Division, AMITY University, Jaipur, Rajasthan, 302 001, India.
Kavi Kishor B PolavarapuDepartment of Veterinary Microbiology, Genomix Molecular Diagnostics Pvt. Ltd, 5-36/207, Prashanthnagar, Kukatpally, Hyderabad, Telangana, 500 072, India. pbkavi@yahoo.com.
Rathnagiri PolavarapuDepartment of Biotechnology, Acharya Nagarjuna University, Guntur, Andhra Pradesh, 522 510, India.

Funding

Department of Biotechnology , Ministry of Science and Technology BT/CRS0226/CRS -11/17
6 · The paper itself

Abstract

The Mycobacterium avium subspecies paratuberculosis (MAP) causes paratuberculosis (Johne's disease), a systemic and chronic inflammation of intestine that affects bovine, small ruminants like goat and sheep. The disease has a greater economic importance in cattle and in small ruminants. But its effective control is impeded due to lack of rapid and accurate diagnostics. The present study is aimed at developing a LAMP-coupled lateral flow device (LFD) for rapid detection of paratuberculosis in livestock animal species such as cattle and in small ruminants at resource-limited areas. LAMP primers with biotin and FITC end tags were designed for IS900 gene specific for MAP. To determine sensitivity of LAMP assay, 10-fold serial dilutions were made from 10 ng/μl MAP stock DNA and were compared with PCR. The detection limits of LAMP-coupled LFD were defined and reactions were repeated for reproducibility. The specificity was evaluated using other infectious bacteria such as M. bovis, M. tuberculosis, Brucella abortus, Leptospira interrogan, Yersinia enterocolitica, Salmonella typhimurium, Listeria monocytogens, and Staphylococcus aureus. A total of 95 samples turned positive for LAMP-coupled LFD out of 389 fecal samples. All the cultural-positive and PCR-positive samples showed positive in LAMP-coupled LFD. Nine samples with negative cultures turned positive in LAMP assay. The overall sensitivity and specificity of the LAMP-coupled LFD assays were 100% and 97.02% respectively in comparison with the culture as the gold standard method. The sensitivity detection limit of developed assay was 10 fg/μl and specificity was 100%. This assay successfully detected MAP not only by using bacterial DNA but also in clinical fecal samples. The clear band formation at control and test positions was observed on LAMP-coupled LFD. The developed assay is a simple, rapid, easy to perform, and is very useful in early diagnosis of Mycobacterium avium subsp. paratuberculosis at point of care resource-limited areas.

Indexed as

AnimalsCattleCattle DiseasesDNA PrimersGoat DiseasesGoatsMycobacterium avium subsp. paratuberculosisNucleic Acid Amplification TechniquesParatuberculosisPoint-of-Care SystemsSensitivity and SpecificitySheepSheep DiseasesDNA PrimersFluorescein isothiocyanate (FITC)Insertion sequence 900 (IS900) geneLateral flow device (LFD)Loop-mediated isothermal amplification (LAMP)Mycobacterium avium subsp. paratuberculosis (MAP)Point of care (POC)Polymerase chain reaction (PCR)

Identifiers

PMID31541428
PMCPMC6863330

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.