Evidence map›Paper›PMID 31541232›Full record

ArticleJournal of Crohn's & colitis2020

Transcriptomic Analysis and High-dimensional Phenotypic Mapping of Mononuclear Phagocytes in Mesenteric Lymph Nodes Reveal Differences Between Ulcerative Colitis and Crohn's Disease.

Laurence Chapuy, Marwa Bsat, Manuel Rubio, François Harvey, Vinicius Motta, Frank Schwenter, Ramses Wassef, Carole Richard, Colette Deslandres, Bich N Nguyen and 6 more

Open access · greenAbstract read
In one paragraph

Article in Journal of Crohn's & colitis, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

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  6. The Known Unknowns of the Immune Response toJournal of fungi (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Laurence ChapuyImmunoregulation Laboratory, Centre de Recherche du Centre Hospitalier de l'Université de Montréal [CRCHUM], Montréal, QC, Canada.
Marwa BsatImmunoregulation Laboratory, Centre de Recherche du Centre Hospitalier de l'Université de Montréal [CRCHUM], Montréal, QC, Canada.
Manuel RubioImmunoregulation Laboratory, Centre de Recherche du Centre Hospitalier de l'Université de Montréal [CRCHUM], Montréal, QC, Canada.
François HarveyDepartment of Biomedical Informatics, Centre de Recherche du Centre Hospitalier de l'Université de Montréal [CRCHUM], Montréal, QC, Canada.
Vinicius MottaMcGill Goodman Research Center, McGill University, Montréal, QC, Canada.
Frank SchwenterDigestive Surgery Department, Centre Hospitalier de l'Université de Montréal [CHUM], Montréal, QC, Canada.
Ramses WassefDigestive Surgery Department, Centre Hospitalier de l'Université de Montréal [CHUM], Montréal, QC, Canada.
Carole RichardDigestive Surgery Department, Centre Hospitalier de l'Université de Montréal [CHUM], Montréal, QC, Canada.
Colette DeslandresDivision of Gastroenterology, Hepatology and Nutrition, Department of Pediatrics, CHU Sainte-Justine, Université de Montreal, QC, Canada.
Bich N NguyenPathology Department, Centre Hospitalier de l'Université de Montréal [CHUM], Montréal, QC, Canada.
Geneviève SoucyPathology Department, Centre Hospitalier de l'Université de Montréal [CHUM], Montréal, QC, Canada.
Nir HacohenBroad Institute of MIT and Harvard, Cambridge, MA USA.
Jorge FritzDepartment of Microbiology and Immunology, McGill University, Montréal, Qc, Canada.
Alexandra-Chloé VillaniBroad Institute of MIT and Harvard, Cambridge, MA USA.
Heena MehtaImmunoregulation Laboratory, Centre de Recherche du Centre Hospitalier de l'Université de Montréal [CRCHUM], Montréal, QC, Canada.
Marika SarfatiImmunoregulation Laboratory, Centre de Recherche du Centre Hospitalier de l'Université de Montréal [CRCHUM], Montréal, QC, Canada.
Centre Hospitalier de l’Université de Montréal · CABroad Institute · USMcGill University · CACentre Hospitalier Universitaire Sainte-Justine · CA

Funding

Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
Center for Cell CircuitsP50HG006193 · NHGRI · BROAD INSTITUTE, INC. · PI REGEV, AVIV · 2011 to 2015
$15.6M
NHGRI NIH HHS P50 HG006193NHGRI NIH HHS T32 HG002295
6 · The paper itself

Abstract

BACKGROUND AND

aimsCrohn's disease [CD] and ulcerative colitis [UC] are distinct forms of inflammatory bowel disease. Heterogeneity of HLA-DR+SIRPα + mononuclear phagocytes [MNPs], including macrophages [MΦ], monocyte-derived [Mono] cells, and dendritic cells [DCs], was reported in gut tissue but not yet investigated in mesenteric lymph nodes [MLNs] of IBD patients. We here compared the phenotype, function, and molecular profile of HLA-DR+SIRPα + MNPs in CD and UC MLNs.

methodsCell distribution, morphology, immune function, and transcriptomic [bulk RNAseq] and high-dimensional protein expression profiles [CyTOF] of HLA-DR+SIRPα + MNPs were examined in MLNs of UC [n = 14], CD [n = 35], and non-IBD [n = 12] patients.

resultsElevated frequencies of CD14+CD64+CD163+ [Mono/MΦ-like] MNPs displaying monocyte/MΦ morphology and phagocytic function were a distinct feature of UC MLNs. In CD, the proportion of CD14-CD64-CD163- [DC-like] cells was augmented relative to Mono/MΦ-like cells; DC-like cells drove naïve T cell proliferation, Th1 polarisation, and Th17 TCM plasticity. Gene expression profile corroborated the nature of DC-like cells, best represented by BTLA, SERPINF, IGJ and, of Mono/MΦ-like cells, defined by CD163, MARCO, MAFB, CD300E, S100A9 expression. CyTOF analysis showed that CD123+ plasmacytoid cells predominated over conventional DCs in DC-like cells. Four CD163+ clusters were revealed in Mono/MΦ-like cells, two of which were enriched in MARCO-CD68dimHLA-DRdim monocyte-like cells and MARCOhiCD68hiHLA-DRhi Mɸ, whose proportion increased in UC relative to CD.

conclusionsDefining the landscape of MNPs in MLNs provided evidence for expansion of CD163+ Mono/MΦ-like cells in UC only, highlighting a distinction between UC and CD, and thus the potential contribution of monocyte-like cells in driving colitis.

Indexed as

Colitis, UlcerativeCrohn DiseaseLymph NodesMononuclear Phagocyte SystemAntigens, CDAntigens, Differentiation, MyelomonocyticCD163 AntigenDendritic CellsFemaleGene Expression ProfilingHumansLipopolysaccharide ReceptorsMaleMesenteryMiddle AgedReceptors, Cell SurfaceAntigens, CDAntigens, Differentiation, MyelomonocyticCD163 AntigenLipopolysaccharide ReceptorsReceptors, Cell SurfaceReceptors, IgGReceptors, ScavengerCrohn’s diseasedendritic cellsmacrophagesmass cytometryMesenteric lymph nodesmonocytesRNAsequlcerative colitis

Identifiers

PMID31541232
PMCPMC7068244
OpenAlexW2973522613

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.