Evidence map›Paper›PMID 31541115›Full record

ArticleScientific reports2019

Understanding pseudo-albinism in sole (Solea senegalensis): a transcriptomics and metagenomics approach.

Patricia I S Pinto, Cláudia C Guerreiro, Rita A Costa, Juan F Martinez-Blanch, Carlos Carballo, Francisco M Codoñer, Manuel Manchado, Deborah M Power

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 27 citations in OpenAlex.

  1. Association between Turbot (Microorganisms · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Patricia I S PintoCentre of Marine Sciences (CCMAR), Universidade do Algarve, Campus de Gambelas, 8005-139, Faro, Portugal.
Cláudia C GuerreiroCentre of Marine Sciences (CCMAR), Universidade do Algarve, Campus de Gambelas, 8005-139, Faro, Portugal.
Rita A CostaCentre of Marine Sciences (CCMAR), Universidade do Algarve, Campus de Gambelas, 8005-139, Faro, Portugal.
Juan F Martinez-BlanchLifeSequencing-ADM Nutrition, Parc Cientific Universidad De Valencia, Edif. 2, C/Catedrático Agustín Escardino Benlloch, 9, 46980, Paterna, Spain.
Carlos CarballoInstituto de Investigación y Formación Agraria y Pesquera (IFAPA) Centro El Toruño, Camino Tiro de Pichon s/n, 11500, Cadiz, Spain.
Francisco M CodoñerLifeSequencing-ADM Nutrition, Parc Cientific Universidad De Valencia, Edif. 2, C/Catedrático Agustín Escardino Benlloch, 9, 46980, Paterna, Spain.
Manuel ManchadoInstituto de Investigación y Formación Agraria y Pesquera (IFAPA) Centro El Toruño, Camino Tiro de Pichon s/n, 11500, Cadiz, Spain. manuel.manchado@juntadeandalucia.es.ORCID http://orcid.org/0000-0002-4584-4878
Deborah M PowerCentre of Marine Sciences (CCMAR), Universidade do Algarve, Campus de Gambelas, 8005-139, Faro, Portugal. dpower@ualg.pt.ORCID http://orcid.org/0000-0003-1366-0246
University of Algarve · PTAndalusian Institute of Agricultural and Fisheries Research and Training · ESParc Científic de la Universitat de València · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudo-albinism is a pigmentation disorder observed in flatfish aquaculture with a complex, multi-factor aetiology. We tested the hypothesis that pigmentation abnormalities are an overt signal of more generalised modifications in tissue structure and function, using as a model the Senegalese sole and two important innate immune barriers, the skin and intestine, and their microbiomes. Stereological analyses in pseudo-albino sole revealed a significantly increased mucous cell number in skin (P < 0.001) and a significantly thicker muscle layer and lamina propria in gut (P < 0.001). RNA-seq transcriptome analysis of the skin and gut identified 573 differentially expressed transcripts (DETs, FDR < 0.05) between pseudo-albino and pigmented soles (one pool/tissue from 4 individuals/phenotype). DETs were mainly linked to pigment production, skin structure and regeneration and smooth muscle contraction. The microbiome (16 S rRNA analysis) was highly diverse in pigmented and pseudo-albino skin but in gut had low complexity and diverged between the two pigmentation phenotypes. Quantitative PCR revealed significantly lower loads of Mycoplasma (P < 0.05) and Vibrio bacteria (P < 0.01) in pseudo-albino compared to the control. The study revealed that pseudo-albinism in addition to pigmentation changes was associated with generalised changes in the skin and gut structure and a modification in the gut microbiome.

Indexed as

AlbinismAnimalsComputational BiologyFlatfishesGastrointestinal MicrobiomeGene Expression ProfilingIntestinesMetagenomicsMicrobiotaSkinTranscriptome

Identifiers

PMID31541115
PMCPMC6754371
OpenAlexW2974676923

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.