Evidence map›Paper›PMID 31540310›Full record

ArticleInternational journal of molecular sciences2019

Cooperative Binding of KaiB to the KaiC Hexamer Ensures Accurate Circadian Clock Oscillation in Cyanobacteria.

Reiko Murakami, Yasuhiro Yunoki, Kentaro Ishii, Kazuki Terauchi, Susumu Uchiyama, Hirokazu Yagi, Koichi Kato

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. The cyanobacterial circadian clock.Npj biological timing and sleep · 2025
    Review
  3. The inner workings of an ancient biological clock.Trends in biochemical sciences · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Reiko MurakamiGraduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho-ku, Nagoya 467-8603, Japan. taniyama@fujita-hu.ac.jp.
Yasuhiro YunokiGraduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho-ku, Nagoya 467-8603, Japan. c182803@ed.nagoya-cu.ac.jp.
Kentaro IshiiGraduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho-ku, Nagoya 467-8603, Japan. kishii@bio.eng.osaka-u.ac.jp.
Kazuki TerauchiGraduate School of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, Japan. terauchi@fc.ritsumei.ac.jp.ORCID 0000-0002-0320-0636
Susumu UchiyamaDepartment of Creative Research, Exploratory Research Center on Life and Living Systems (ExCELLS), National Institutes of Natural Sciences, 5-1 Higashiyama, Myodaiji-cho, Okazaki 444-8787, Japan. suchi@bio.eng.osaka-u.ac.jp.
Hirokazu YagiGraduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho-ku, Nagoya 467-8603, Japan. hyagi@phar.nagoya-cu.ac.jp.ORCID 0000-0001-9296-0225
Koichi KatoGraduate School of Pharmaceutical Sciences, Nagoya City University, 3-1 Tanabe-dori, Mizuho-ku, Nagoya 467-8603, Japan. kkato@excells.orion.ac.jp.ORCID 0000-0001-7187-9612

Funding

Japan Society for the Promotion of Science JP15K18492, JP18J21063, JP16H00784,17K19247, JP18K14671, JP25102001 and JP25102008
6 · The paper itself

Abstract

The central oscillator generating cyanobacterial circadian rhythms comprises KaiA, KaiB, and KaiC proteins. Their interactions cause KaiC phosphorylation and dephosphorylation cycles over approximately 24 h. KaiB interacts with phosphorylated KaiC in competition with SasA, an output protein harboring a KaiB-homologous domain. Structural data have identified KaiB-KaiC interaction sites; however, KaiB mutations distal from the binding surfaces can impair KaiB-KaiC interaction and the circadian rhythm. Reportedly, KaiB and KaiC exclusively form a complex in a 6:6 stoichiometry, indicating that KaiB-KaiC hexamer binding shows strong positive cooperativity. Here, mutational analysis was used to investigate the functional significance of this cooperative interaction. Results demonstrate that electrostatic complementarity between KaiB protomers promotes their cooperative assembly, which is indispensable for accurate rhythm generation. SasA does not exhibit such electrostatic complementarity and noncooperatively binds to KaiC. Thus, the findings explain KaiB distal mutation effects, providing mechanistic insights into clock protein interplay.

Indexed as

Bacterial ProteinsBinding SitesCircadian ClocksCircadian Rhythm Signaling Peptides and ProteinsCyanobacteriaGene Expression Regulation, BacterialModels, MolecularPhosphorylationPromoter Regions, GeneticProtein BindingProtein ConformationProtein MultimerizationBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsKaiB protein, cyanobacteriaKaiC protein, cyanobacteriacircadian rhythmclock proteincooperative interactioncooperativitynative mass spectrometry

Identifiers

PMID31540310
PMCPMC6769508

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.