Evidence map›Paper›PMID 31539405›Full record

ArticlePloS one2019

Dysregulation of microRNAs and target genes networks in human abdominal aortic aneurysm tissues.

Neire Niara Ferreira de Araujo, Hui Tzu Lin-Wang, Juliana de Freitas Germano, Pedro Silvio Farsky, Andre Feldman, Fabio Henrique Rossi, Nilo Mitsuru Izukawa, Maria de Lourdes Higuchi, Felicio Savioli Neto, Mario Hiroyuki Hirata and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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  7. Leveraging cell-type-specific regulatory networks to interpret genetic variants in abdominal aortic aneurysm.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Neire Niara Ferreira de AraujoDepartment of Clinical Cardiology, Dante Pazzanese Institute of Cardiology, Sao Paulo, Brazil.ORCID 0000-0002-1229-9834
Hui Tzu Lin-WangLaboratory of Molecular Investigation in Cardiology, Dante Pazzanese Institute of Cardiology, Sao Paulo, Brazil.
Juliana de Freitas GermanoSchool of Pharmaceutical Sciences, University of Sao Paulo, Sao Paulo, Brazil.
Pedro Silvio FarskyDepartment of Clinical Cardiology, Dante Pazzanese Institute of Cardiology, Sao Paulo, Brazil.
Andre FeldmanDepartment of Clinical Cardiology, Dante Pazzanese Institute of Cardiology, Sao Paulo, Brazil.
Fabio Henrique RossiDepartment of Vascular Surgery, Dante Pazzanese Institute of Cardiology, Sao Paulo, Brazil.
Nilo Mitsuru IzukawaDepartment of Vascular Surgery, Dante Pazzanese Institute of Cardiology, Sao Paulo, Brazil.
Maria de Lourdes HiguchiLaboratory of Cardiac Pathology, Heart Institute, School of Medicine, University of Sao Paulo, Sao Paulo, Brazil.
Felicio Savioli NetoDepartment of Clinical Cardiology, Dante Pazzanese Institute of Cardiology, Sao Paulo, Brazil.
Mario Hiroyuki HirataLaboratory of Molecular Investigation in Cardiology, Dante Pazzanese Institute of Cardiology, Sao Paulo, Brazil.
Marcelo Chiara BertolamiDepartment of Clinical Cardiology, Dante Pazzanese Institute of Cardiology, Sao Paulo, Brazil.
Instituto Dante Pazzanese de Cardiologia · BRUniversidade de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAbdominal aortic aneurysm (AAA) is a pathological enlargement of infrarenal aorta close to the aortic bifurcation, and it is an important cause of mortality in the elderly. Therefore, the biomarker identification for early diagnosis is of great interest for clinical benefit. It is known that microRNAs (miRNAs) have important roles via target genes regulation in many diseases. This study aimed to identify miRNAs and their target genes involved in the pathogenesis of AAA.

methodsTissue samples were obtained from patients who underwent AAA surgery and from organ donors (control group). Quantitative PCR Array was applied to assess 84 genes and 384 miRNAs aiming to identify differentially expressed targets (AAA n = 6, control n = 6), followed by validation in a new cohort (AAA n = 18, control n = 6) by regular qPCR. The functional interaction between validated miRNAs and target genes was performed by the Ingenuity Pathway Analysis (IPA) software.

resultsThe screening cohort assessed by PCR array identified 10 genes and 59 miRNAs differentially expressed (≥2-fold change, p<0.05). Among these, IPA identified 5 genes and 9 miRNAs with paired interaction. ALOX5, PTGIS, CX3CL1 genes, and miR-193a-3p, 125b-5p, 150-5p maintained a statistical significance in the validation cohort. IPA analysis based on the validated genes and miRNAs revealed that eicosanoid and metalloproteinase/TIMP synthesis are potentially involved in AAA.

conclusionPaired interactions of differentially expressed ALOX5, PTGIS, CX3CL1 genes, and miR-193b-3p, 125b-5p, 150-5p revealed a potentially significant role of the eicosanoid synthesis and metalloproteinase/TIMP pathways in the AAA pathogenesis.

Indexed as

Gene Expression RegulationGene Regulatory NetworksAdultAgedAortic Aneurysm, AbdominalCohort StudiesFemaleGene Expression ProfilingHumansMaleMicroRNAsMiddle AgedReverse Transcriptase Polymerase Chain ReactionSignal TransductionMicroRNAs

Identifiers

PMID31539405
PMCPMC6754147
OpenAlexW2973992289

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.