Evidence map›Paper›PMID 31538961›Full record

ArticleIET systems biology2019

Drug repositioning via matrix completion with multi-view side information.

Yunda Hao, Menglan Cai, Limin Li

Open access · hybridAbstract read
In one paragraph

Article in IET systems biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yunda HaoSchool of Mathematics and Statistics, Xi'an Jiaotong University, Xianning West 28, Xi'an, People's Republic of China.
Menglan CaiSchool of Mathematics and Statistics, Xi'an Jiaotong University, Xianning West 28, Xi'an, People's Republic of China.
Limin LiSchool of Mathematics and Statistics, Xi'an Jiaotong University, Xianning West 28, Xi'an, People's Republic of China. liminli@mail.xjtu.edu.cn.
Xi'an Jiaotong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the process of drug discovery and disease treatment, drug repositioning is broadly studied to identify biological targets for existing drugs. Many methods have been proposed for drug-target interaction prediction by taking into account different kinds of data sources. However, most of the existing methods only use one side information for drugs or targets to predict new targets for drugs. Some recent works have improved the prediction accuracy by jointly considering multiple representations of drugs and targets. In this work, the authors propose a drug-target prediction approach by matrix completion with multi-view side information (MCM) of drugs and proteins from both structural view and chemical view. Different from existing studies for drug-target prediction, they predict drug-target interaction by directly completing the interaction matrix between them. The experimental results show that the MCM method could obtain significantly higher accuracies than the comparison methods. They finally report new drug-target interactions for 26 FDA-approved drugs, and biologically discuss these targets using existing references.

Indexed as

Computational BiologyDrug ApprovalDrug RepositioningPharmaceutical PreparationsProteinsPharmaceutical PreparationsProteins

Identifiers

PMID31538961
PMCPMC8687211
OpenAlexW2959131201

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.